Justin,<br>
<br><br><div class="gmail_quote">2011/11/11 Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span><br><blockquote class="gmail_quote" style="margin: 0pt 0pt 0pt 0.8ex; border-left: 1px solid rgb(204, 204, 204); padding-left: 1ex;">
<div class="im"><br>
<br></div>
If the bilayer is splitting across periodic boundaries (I'm assuming
that's what you mean by "pb"), then it's more likely that you placed the
components of your system in an inconvenient way than it is that
something is actually wrong.<br></blockquote><div><br>
Bilayer has moved on Z-dimension in periodic box. That is actually what's happend :)<br>
<a href="http://i1209.photobucket.com/albums/cc394/own11/vmdscene.gif">http://i1209.photobucket.com/albums/cc394/own11/vmdscene.gif</a> <br>
<br>
<br>
By the way I'ts intresting that Gmembed has removed 6 lipids in
comparison to the inflateglo ( althought I've done all things in
accordance to the KALP tutorial because my protein is the same). </div><div><br>
<br>
James <br></div></div><br><br><br>