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The most reasonable thing is that there is a typo in your .mdp or in
your .top files.<br>
Check where you've written "Ptotein" instead of Protein<br>
<br>
<br>
On 11/25/11 4:09 PM, yp sun wrote:
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<div>Dear Sir'</div>
<div> </div>
<div>When I ran the grompp as following</div>
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<div>grompp -v -f md.mdp -c pr.gro -p RI-10.top -o md.tpr</div>
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<div>a error information appeared: </div>
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<div><br>
</div>
<div>Program grompp, VERSION 3.3.1<br>
Source code file: readir.c, line: 789</div>
<div>Fatal error:<br>
<font style="BACKGROUND-COLOR: #ffff00">Group Ptotein</font>
not found in indexfile<br>
Maybe you have non-default goups in your mdp file, while
not using the '-n' opti on of grompp.<br>
In that case use the '-n' option</div>
<div> </div>
<div>I don't know which file "<font
style="BACKGROUND-COLOR: #ffff00">Group Ptotein</font><font
style="BACKGROUND-COLOR: #ffffff">" </font><font
style="BACKGROUND-COLOR: #ffffff">is in and where I
should make change.</font></div>
<div> </div>
<div><font style="BACKGROUND-COLOR: #ffffff">Can you help
me? Thanks in advance.</font></div>
<div><br>
Yeping Sun<br>
CAS Key Laboratory of Pathogenic Microbiology &
Immunology<br>
INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES <br>
NO.1 Beichen West Road,Chaoyang District,Beijing
100101,china</div>
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<pre class="moz-signature" cols="72">--
Gianluca Santoni,
Institut de Biologie Structurale
41 rue Horowitz
Grenoble
_________________________________________________________
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