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    On 28/11/2011 10:09 PM, yp sun wrote:
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            <td style="font: inherit;" valign="top">I think by running
              pdb2gmx you can get .itp file.<br>
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    ... only if there are corresponding .rtp entries, which is likely
    not the case for GTP. pdb2gmx is not magic.<br>
    <br>
    Mark<br>
    <br>
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              Yeping Sun<br>
              CAS Key Laboratory of Pathogenic Microbiology &amp;
              Immunology<br>
              INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES <br>
              NO.1 Beichen West Road,Chaoyang District,Beijing
              100101,china<br>
              <br>
              --- <b>11&#24180;11&#26376;28&#26085;&#65292;&#21608;&#19968;, David van der Spoel <i><a class="moz-txt-link-rfc2396E" href="mailto:spoel@xray.bmc.uu.se">&lt;spoel@xray.bmc.uu.se&gt;</a></i></b>
              &#20889;&#36947;&#65306;<br>
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                &#21457;&#20214;&#20154;: David van der Spoel <a class="moz-txt-link-rfc2396E" href="mailto:spoel@xray.bmc.uu.se">&lt;spoel@xray.bmc.uu.se&gt;</a><br>
                &#20027;&#39064;: Re: [gmx-users] .top to .itp file conversion<br>
                &#25910;&#20214;&#20154;: "Discussion list for GROMACS users"
                <a class="moz-txt-link-rfc2396E" href="mailto:gmx-users@gromacs.org">&lt;gmx-users@gromacs.org&gt;</a><br>
                &#26085;&#26399;: 2011&#24180;11&#26376;28&#26085;,&#21608;&#19968;,&#19979;&#21320;4:22<br>
                <br>
                <div class="plainMail">On 2011-11-28 09:20, neeru sharma
                  wrote:<br>
                  &gt; Dear gromacs users,<br>
                  &gt;<br>
                  &gt; I have generated Amber topology and coordinate
                  files for GTP molecule.<br>
                  &gt; Then, I converted them into the corresponding
                  gromacs topology (.top)<br>
                  &gt; and coordinate files (.gro). Now, I need to
                  convert this gromacs .top<br>
                  &gt; file into .itp format.<br>
                  &gt; Is there any command in gromacs or any other tool
                  to do so.<br>
                  &gt; Thanks<br>
                  &gt;<br>
                  &gt; ----<br>
                  &gt; Neeru Sharma<br>
                  &gt; CDAC,Pune (India)<br>
                  &gt;<br>
                  &gt;<br>
                  &gt;<br>
                  emacs or vi. your choice.<br>
                  <br>
                  -- <br>
                  David van der Spoel, Ph.D., Professor of Biology<br>
                  Dept. of Cell &amp; Molec. Biol., Uppsala University.<br>
                  Box 596, 75124 Uppsala, Sweden. Phone:&nbsp;&nbsp;&nbsp;
                  +46184714205.<br>
                  <a moz-do-not-send="true"
                    href="http://cn.mc156.mail.yahoo.com/mc/compose?to=spoel@xray.bmc.uu.se"
                    ymailto="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a>&nbsp;
                  &nbsp; <a moz-do-not-send="true"
                    href="http://folding.bmc.uu.se/" target="_blank">http://folding.bmc.uu.se</a><br>
                  -- <br>
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