I didn't understand what you meant by that link. Can you please tell me what can be done ??<br><br><div class="gmail_quote">On Fri, Dec 2, 2011 at 11:52 AM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex;"><div class="im"><br>
<br>
bharat gupta wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Sorry I didn't understand . Can u brief it ??<br>
<br>
</blockquote>
<br></div>
I already did:<br>
<br>
<a href="http://lists.gromacs.org/pipermail/gmx-users/2011-December/066664.html" target="_blank">http://lists.gromacs.org/<u></u>pipermail/gmx-users/2011-<u></u>December/066664.html</a><br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im">
On Fri, Dec 2, 2011 at 11:47 AM, Justin A. Lemkul <<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a> <mailto:<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a>>> wrote:<br>
<br>
<br>
<br>
bharat gupta wrote:<br>
<br>
Yes, I prepared the protein file separately using pdb2gmx and<br>
then I pasted the ligand manually from the docked file.<br>
<br>
<br>
Then you prepared it incorrectly. You need to use the right units.<br>
<br>
-Justin<br>
<br>
<br></div>
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Justin A. Lemkul<br>
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ICTAS Doctoral Scholar<br>
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Virginia Tech<br>
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-- <br>
Bharat<br>
Ph.D. Candidate<br>
Room No. : 7202A, 2nd Floor<br>
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Pusan National University<br>
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</blockquote><div class="HOEnZb"><div class="h5">
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==============================<u></u>==========<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Bharat<br>Ph.D. Candidate<br>Room No. : 7202A, 2nd Floor<br>Biomolecular Engineering Laboratory<br>Division of Chemical Engineering and Polymer Science<br>Pusan National University<br>
Busan -609735<br>South Korea<br>Lab phone no. - +82-51-510-3680, +82-51-583-8343<div>Mobile no. - 010-5818-3680<br>E-mail : <a href="mailto:monu46010@yahoo.com" target="_blank">monu46010@yahoo.com</a></div><br>