<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div><span>Hi,</span></div><div><span> This has been compiled and installed in same machine which runs Linux. It never happens in any other version lower than gromacs4.5.</span></div><div><span>Sanku</span></div><div><br></div> <div style="font-size: 12pt; font-family: 'times new roman', 'new york', times, serif; "> <div style="font-size: 12pt; font-family: 'times new roman', 'new york', times, serif; "> <font size="2" face="Arial"> <hr size="1"> <b><span style="font-weight:bold;">From:</span></b> "Broadbent, Richard" <richard.broadbent09@imperial.ac.uk><br> <b><span style="font-weight: bold;">To:</span></b> Sanku M <msanku65@yahoo.com>; Discussion list for GROMACS users <gmx-users@gromacs.org> <br> <b><span style="font-weight: bold;">Sent:</span></b> Saturday, December 3, 2011 7:24 PM<br> <b><span
style="font-weight: bold;">Subject:</span></b> Re: [gmx-users] output logfile <br> </font> <br>
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<title>Re: [gmx-users] output logfile</title>
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<font face="Calibri, Verdana, Helvetica, Arial"><span style="font-size:11pt;">Hi Sanku<br>
<br>
The ^M ‘s in that sample indicate a line break that was issued by a different text formatting standard. This frequently happens if files are generated in one OS say Windows then viewed in another say unix. Is your version of gromacs compiled for your system
or was is compiled for a different machine/OS?<br>
<br>
Richard<br>
<br>
<br>
On 03/12/2011 19:50, "Sanku M" <<a rel="nofollow">msanku65@yahoo.com</a>> wrote:<br>
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<blockquote><font face="Times New Roman"><span style="font-size:12pt;">Hi,<br>
It might be a very minor issue but I find in versions of gromacs 4.5.4, the output log file ( in verbose mode) writes the progress of the simulation in a single line ( unlike in previous gromacs 4.0.7 version) where it used to write the progress in a new lines.
As a result, in gromacs4.5.4, opening a logfile or issuing unix 'tail' command to see last few lines becomes a bit time-consuming as the progress is written in a single line.<br>
<br>
An example is shown below for gromacs 4.5.4:<br>
^Mstep 2100, will finish Sat Dec 3 19:55:12 2011vol 0.79 imb F 0% ^Mstep 2200, will finish Sat Dec 3 19:54:59 2011vol 0.80 imb F 1% ^Mstep 2300, will finish Sat Dec 3 19:54:49 2011vol 0.79 imb F 1% ^Mstep 2400, will finish Sat Dec 3 19:54:40 2011vol
0.80 imb F 0% ^Mstep 2500, will finish Sat Dec 3 19:54:31 2011vol 0.80 imb F 1% ^Mstep 2600, will finish Sat Dec 3 19:54:22 2011vol 0.80 imb F 1% ^Mstep 2700, will finish Sat Dec 3<br>
<br>
I wonder whether there is an fix for this minor issue. <br>
<br>
Thanks<br>
Sanku<br>
<br>
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