<br>Hi,<br><br><br>When i tried running mdrun without mip i received the same error ie<br><br>when i gave mdrun -deffnm md<br><br>i got=<br>Back Off! I just backed up md.log to ./#md.log.1#<br>Getting Loaded...<br>Reading file md.tpr, VERSION 4.5.4 (single precision)<br>
Loaded with Money<br><br>p0_23443: p4_error: interrupt SIGx: 4<br><br><br>Thanks,<br>Aiswarya<br><br><div class="gmail_quote">On Wed, Dec 14, 2011 at 5:00 PM, aiswarya pawar <span dir="ltr"><<a href="mailto:aiswarya.pawar@gmail.com">aiswarya.pawar@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi users,<br><br>I have a submission script for gromacs mdrun to be used on IBM cluster, but i get an error while running it. the script goes like this=<br>
<br>#!/bin/sh<br># @ error = job1.$(Host).$(Cluster).$(Process).err<br>
# @ output = job1.$(Host).$(Cluster).$(Process).out<br># @ class = ptask32<br># @ job_type = parallel<br># @ node = 1<br># @ tasks_per_node = 4<br># @ queue<br><br>echo "_____________________________________"<br>
echo "LOADL_STEP_ID=$LOADL_STEP_ID"<br>echo "_____________________________________"<br><br>machine_file="/tmp/machinelist.$LOADL_STEP_ID"<br>rm -f $machine_file<br>for node in $LOADL_PROCESSOR_LIST<br>
do<br>echo $node >> $machine_file<br>done<br>machine_count=`cat /tmp/machinelist.$LOADL_STEP_ID|wc -l`<br>echo $machine_count<br>echo MachineList:<br>cat /tmp/machinelist.$LOADL_STEP_ID<br>echo "_____________________________________"<br>
unset LOADLBATCH<br>env |grep LOADLBATCH<br>cd /home/staff/1adf/<br>/usr/bin/poe /home/gromacs-4.5.5/bin/mdrun -deffnm /home/staff/1adf/md -procs $machine_count -hostfile /tmp/machinelist.$LOADL_STEP_ID<br>rm /tmp/machinelist.$LOADL_STEP_ID<br>
<br><br>i get an out file as=<br>_____________________________________<br>LOADL_STEP_ID=cnode39.97541.0<br>_____________________________________<br>4<br>MachineList:<br>cnode62<br>cnode7<br>cnode4<br>cnode8<br>_____________________________________<br>
p0_25108: p4_error: interrupt SIGx: 4<br>p0_2890: p4_error: interrupt SIGx: 4<br>p0_2901: p4_error: interrupt SIGx: 15<br>p0_22760: p4_error: interrupt SIGx: 15<br><br><br>an error file =<br><br>Reading file /home/staff/1adf/md.tpr, VERSION 4.5.4 (single precision)<br>
Sorry couldn't backup /home/staff/1adf/md.log to /home/staff/1adf/#md.log.14#<br><br>Back Off! I just backed up /home/staff/1adf/md.log to /home/staff/1adf/#md.log.14#<br>ERROR: 0031-300 Forcing all remote tasks to exit due to exit code 1 in task 0<br>
<br>Please anyone can help with this error.<br><br>Thanks<br><br><br>
<br>
</blockquote></div><br>