<html>
<head>
<meta content="text/html; charset=ISO-8859-1"
http-equiv="Content-Type">
</head>
<body bgcolor="#FFFFFF" text="#000000">
On 12/25/2011 6:04 PM, banafsheh mehrazma wrote:
<blockquote
cite="mid:1324796677.48471.YahooMailNeo@web160302.mail.bf1.yahoo.com"
type="cite">
<div style="color:#000; background-color:#fff; font-family:times
new roman, new york, times, serif;font-size:12pt">
<div><span>Dear Mark;</span></div>
<div><span>Thank you for your instant reply. You are right, but
in my case, there is a residue 8-OxoG (oxidized G). As you
know, in all of the force fields in Gromacs package, G,C,A
and T are known. In your opinion, what should I do in case
of 8-OxoG, to obtain parameters needed for this new residue?</span></div>
<br>
</div>
</blockquote>
<br>
You're assuming that you need a new atom type and/or bonded
parameters for your force field. You have to determine whether that
is true, yet.<br>
<br>
Mark<br>
<br />--
<br />This message has been scanned for viruses and
<br />dangerous content by
<a href="http://www.mailscanner.info/"><b>MailScanner</b></a>, and is
<br />believed to be clean.
</body>
</html>