<html><body><div style="color:#000; background-color:#fff; font-family:bookman old style, new york, times, serif;font-size:14pt"><div>Dear GROMACS users,</div><div><br></div><div id="yiv1803342349yui_3_2_0_17_132506706382863">I have a problem
about trjconv -pbc nojump, I have 2 micelles in the end of my simulation.
For analysis I should do three steps for micelle clustering at</div><div id="yiv1803342349yui_3_2_0_17_132506706382884"> http://www.gromacs.org/Documentation/How-tos/Micelle_Clustering?highlight=micelle+clustering </div><div id="yiv1803342349yui_3_2_0_17_132506706382885">Steps 1 and 2 work good and when I view my trajectory after step2 by :</div><div id="yiv1803342349yui_3_2_0_17_1325067063828128">ngmx -f a_cluster.gro -s a_cluster.tpr</div><div id="yiv1803342349yui_3_2_0_17_1325067063828131">is viewed 2 micelles, but when I did step 3 (trjconv -nojump) and after do : ngmx -f a_cluster.xtc -s
a_cluster.tpr</div><div id="yiv1803342349yui_3_2_0_17_1325067063828152">has been created 1 micelle and reminder of monomers have been collected as some groups at different places.<br>May I ask you to help me, please?<br>Thank you<br><br>Best Regards<br>Sara<br></div><br> <br></div></body></html>