Hello buddies,<div><br></div><div>I'm a very beginner in gromacs and I just got a trick but simple situation (for you :D). After the installation of my gromacs on ubuntu 11.10 I opened the .bashrc file and put the following code in the following place as instructed by installation session on the webpage:</div>
<div><br></div><div><div>.BASHRC file</div><div># Add an "alert" alias for long running commands. Use like so:</div><div># sleep 10; alert</div><div>alias alert='notify-send --urgency=low -i "$([ $? = 0 ] && echo terminal || echo error)" "$(history|tail -n1|sed -e '\''s/^\s*[0-9]\+\s*//;s/[;&|]\s*alert$//'\'')"'</div>
<div><br></div><div># Alias definitions.</div><div># You may want to put all your additions into a separate file like</div><div># ~/.bash_aliases, instead of adding them here directly.</div><div># See /usr/share/doc/bash-doc/examples in the bash-doc package.</div>
<div><br></div><div>if [ -f ~/.bash_aliases ]; then</div><div> . ~/.bash_aliases</div><div>fi</div><div><br></div><div>#this should be an access to gromacs</div><div><font color="#ffff33" style="background-color:rgb(0,0,0)">source . /usr/local/gromacs/bin/GMXRC</font></div>
<div><br></div><div># enable programmable completion features (you don't need to enable</div><div># this, if it's already enabled in /etc/bash.bashrc and /etc/profile</div><div># sources /etc/bash.bashrc).</div><div>
if [ -f /etc/bash_completion ] && ! shopt -oq posix; then</div><div> . /etc/bash_completion</div><div>fi</div></div><div><br></div><div>I already tried using . /usr/local/gromacs/GMXRC in the begin and also just /usr/local/gromacs/GMXRC (without the point) and even thereafter I couldn't run the program. Unfortunately I really don't know what to do I've already read the final installation instructions many times and tried to google something related but I had no luck.</div>
<div><br></div><div>Please someone can provide me some light on this issue??</div><div><br></div><div>Thanks all of you.</div><div><br></div><div>Willian Felix </div>