<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div style="RIGHT: auto"><SPAN style="RIGHT: auto">Dear Mark,</SPAN></div>
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<div style="RIGHT: auto"><SPAN style="RIGHT: auto">If "<SPAN style="FONT-FAMILY: courier new, courier, monospace">--<FONT style="BACKGROUND-COLOR: yellow">disable</FONT>-threads</SPAN> ", how it will influence the function of GROMACS?</SPAN></div>
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<div style="RIGHT: auto"><SPAN style="RIGHT: auto">Secondly, for the webpage you introduced to me "<A style="RIGHT: auto" href="http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO" rel=nofollow target=_blank>http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO</A>", "Edit your login files to source /usr/local/gromacs/bin/GMXRC (or manually add /usr/local/gromacs/man to the MANPATH and check that /usr/local/bin is in the PATH)" is a little difficult to me. What is "GMXRC"? What is the login files? How to find the MANPATH? How do I know whther /usr/local/bin is in the PATH is in the path? How can source /usr/local/gromacs/bin/GMXRC?</SPAN></div>
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<div style="RIGHT: auto"><SPAN style="RIGHT: auto">I am looking forward to getting a reply from you.</SPAN></div>
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<div style="RIGHT: auto"><SPAN style="RIGHT: auto">Dialing</SPAN></div>
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<DIV style="BORDER-BOTTOM: #ccc 1px solid; BORDER-LEFT: #ccc 1px solid; PADDING-BOTTOM: 0px; LINE-HEIGHT: 0; MARGIN: 5px 0px; PADDING-LEFT: 0px; PADDING-RIGHT: 0px; HEIGHT: 0px; FONT-SIZE: 0px; BORDER-TOP: #ccc 1px solid; BORDER-RIGHT: #ccc 1px solid; PADDING-TOP: 0px" class=hr contentEditable=false readonly="true"></DIV><B><SPAN style="FONT-WEIGHT: bold">From:</SPAN></B> Mark Abraham <Mark.Abraham@anu.edu.au><BR><B><SPAN style="FONT-WEIGHT: bold">To:</SPAN></B> Discussion list for GROMACS users <gmx-users@gromacs.org> <BR><B><SPAN style="FONT-WEIGHT: bold">Sent:</SPAN></B> Tuesday, 10 January 2012 12:29 PM<BR><B><SPAN style="FONT-WEIGHT: bold">Subject:</SPAN></B> Re: [gmx-users] q question related to gromacsinstallation by cygwin<BR></FONT><BR>
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<DIV style="RIGHT: auto">On 10/01/2012 12:24 PM, Dialing Pretty wrote:
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<DIV style="RIGHT: auto">Dear All,<BR><BR>I have tried to install gromacs-4.5.5 by cygwin but I meet the following problems.<BR><BR>I am looking forward to getting your suggestions on how to solve the problem.<BR><BR>Dialing<BR><BR><BR><BR>$ make</DIV>
<DIV>Making all in include</DIV>
<DIV>make[1]: Entering directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'</DIV>
<DIV>Making all in .</DIV>
<DIV>make[2]: Entering directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'</DIV>
<DIV>make[2]: Nothing to be done for `all-am'.</DIV>
<DIV>make[2]: Leaving directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'</DIV>
<DIV>Making all in types</DIV>
<DIV>make[2]: Entering directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include/types'</DIV>
<DIV>make[2]: *** No rule to make target `all'. Stop.</DIV>
<DIV>make[2]: Leaving directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include/types'</DIV>
<DIV>Makefile:479: recipe for target `all-recursive' failed</DIV>
<DIV>make[1]: *** [all-recursive] Error 1</DIV>
<DIV>make[1]: Leaving directory `/cygdrive/d/GROMACS2/gromacs-4.5.5/include'</DIV>
<DIV>Makefile:347: recipe for target `all-recursive' failed</DIV>
<DIV>make: *** [all-recursive] Error 1</DIV></DIV></BLOCKQUOTE><BR>The actual error occurred further up, so we cannot give specific help. Be sure you are following the instructions here <A style="RIGHT: auto" href="http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO" rel=nofollow target=_blank>http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO</A>, in particular --disable-threads.<BR><BR>Mark<BR></DIV></DIV>
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