Hi GROMACS Users,<br><br> I have simulated a protein(pdb id 3D9S) for 5 nanoseconds. This protein contains 978 residues and after 5 nanoseconds I got 2.35 by comparing pdb structure with simulated one. I want to know is this value is ok or protein is disrupted?<br>
<br> Yours faithfully,<br>
Madhumita Das<br>