Hi GROMACS Users,<br><br>                                  I have simulated a protein(pdb id 3D9S) for 5 nanoseconds. This protein contains 978 residues and after 5 nanoseconds I got 2.35 by comparing pdb structure with simulated one. I want to know is this value is ok or protein is disrupted?<br>
                                                                                                                                                  <br>                                                                                                                                                       Yours faithfully,<br>
                                                                                                                                                        Madhumita Das<br>