Thank you. Imagine I would like to put ligands in further simulations. Should I then copy coordinates of my ligands in smaller box (not to overlap my tube) and then copy both coordinates of ions and ligands plus protein?<br>
<br>
<div class="gmail_quote">On Tue, Jan 10, 2012 at 11:31 AM, Mark Abraham <span dir="ltr"><<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">
<div class="im">On 10/01/2012 10:13 PM, Steven Neumann wrote:<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">Thank you. Should I also copy and paste coordinates of my ions or just my protein?<br><br></blockquote><br></div>
The randomly-placed ions will be immaterial for EM.
<div class="HOEnZb">
<div class="h5"><br><br>Mark<br>-- <br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br><a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/<u></u>mailman/listinfo/gmx-users</a><br>
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