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On 11/01/2012 10:07 PM, Anik Sen wrote:
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<div style="direction: ltr; font-family: Tahoma; color: rgb(0, 0,
0); font-size: 10pt;">I have already done that but the problem
persisits.<br>
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<br>
Get a clean tarball of FFTW3 and follow
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/Downloads/Installation_Instructions#Details_for_building_the_FFTW_prerequisite">http://www.gromacs.org/Downloads/Installation_Instructions#Details_for_building_the_FFTW_prerequisite</a>.
Probably you have a mess of previous configure commands, or didn't
actually install the --enable-shared binaries.<br>
<br>
Mark<br>
<br>
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<div style="direction: ltr;" id="divRpF880567"><font
color="#000000" face="Tahoma" size="2"><b>From:</b>
<a class="moz-txt-link-abbreviated" href="mailto:gmx-users-bounces@gromacs.org">gmx-users-bounces@gromacs.org</a>
[<a class="moz-txt-link-abbreviated" href="mailto:gmx-users-bounces@gromacs.org">gmx-users-bounces@gromacs.org</a>] on behalf of Javier Cerezo
[<a class="moz-txt-link-abbreviated" href="mailto:jcb1@um.es">jcb1@um.es</a>]<br>
<b>Sent:</b> Wednesday, January 11, 2012 1:56 PM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<b>Subject:</b> Re: [gmx-users] (no subject)<br>
</font><br>
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<div>Hi<br>
<br>
You should compile your fftw with --enable-shared if you
want to link your gromacs installation to shared libraries
(which is the default in the latest versions). Check the
installation instructions in the website.<br>
<br>
Javier<br>
<br>
El 11/01/12 08:20, Anik Sen escribió:
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<font size="3"><span style="font-family: Times New
Roman;">Im having problems installing Gromacs. I
followed the GROMACS installation instructions as
suggested by justin</span></font>. But in vain. The
same error is coming again and again. Please suggest.<br>
<br>
The error file is given below:<br style="font-family:
Times New Roman;">
<font size="4"><br>
<br style="font-family: Times New Roman;">
</font>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>/usr/bin/ld:
/usr/local/lib/libfftw3.a(<wbr>plan-dft-r2c-3d.o):
relocation R_X86_64_32 against `a local symbol'
can not be used when making a shared object;
recompile with -fPIC</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>/usr/local/lib/libfftw3.a:
could not read symbols: Bad value</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>collect2: ld returned
1 exit status</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[3]: *** [<a
moz-do-not-send="true"
href="http://libmd_d.la/" target="_blank">libmd_d.la</a>]
Error 1</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[3]: Leaving
directory `/home/ganguly/Gromacs/<wbr>gromacs-4.5.5/src/mdlib'</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[2]: ***
[all-recursive] Error 1</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[2]: Leaving
directory `/home/ganguly/Gromacs/<wbr>gromacs-4.5.5/src'</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[1]: *** [all]
Error 2</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[1]: Leaving
directory `/home/ganguly/Gromacs/<wbr>gromacs-4.5.5/src'</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make: ***
[all-recursive] Error 1</font></b></font></p>
<p style="text-align: left;"><br>
</p>
<p style="text-align: left;"><br>
</p>
Thanx in advance<br>
Anik<br>
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<div style="font-size: 9pt; font-family:
'Calibri',sans-serif;">========================================================<br>
Anik Sen<br>
Student<br>
CSIR-Central Salt & Marine Chemicals Research
Institute,<br>
Gijubhai Badheka Marg.<br>
Bhavnagar, Gujarat 364002<br>
<div><img moz-do-not-send="true" alt="www.csmcri.org"
src="http://www.csmcri.org/images/logo.png"></div>
========================================================</div>
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<pre class="moz-signature" cols="72">--
Javier CEREZO BASTIDA
PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Phone: (+34)868887434</pre>
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