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You need to post how did you exactly installed fftw and gromacs in
order to get more help. It seems to me that the problem is related
to the shared fftw libraries. Could you compile the gromacs binaries
with --disable-shared?<br>
<br>
Javier<br>
<br>
El 11/01/12 12:07, Anik Sen escribió:
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cite="mid:BDE9D87D31C781498280133FD1BE69A51DD0D875@EXCHANGE.csmcri.org"
type="cite">
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<div style="direction: ltr;font-family: Tahoma;color:
#000000;font-size: 10pt;">I have already done that but the
problem persisits.<br>
<br>
<div style="font-family: Times New Roman; color: rgb(0, 0, 0);
font-size: 16px;">
<hr tabindex="-1">
<div style="direction: ltr;" id="divRpF880567"><font
color="#000000" face="Tahoma" size="2"><b>From:</b>
<a class="moz-txt-link-abbreviated" href="mailto:gmx-users-bounces@gromacs.org">gmx-users-bounces@gromacs.org</a>
[<a class="moz-txt-link-abbreviated" href="mailto:gmx-users-bounces@gromacs.org">gmx-users-bounces@gromacs.org</a>] on behalf of Javier Cerezo
[<a class="moz-txt-link-abbreviated" href="mailto:jcb1@um.es">jcb1@um.es</a>]<br>
<b>Sent:</b> Wednesday, January 11, 2012 1:56 PM<br>
<b>To:</b> <a class="moz-txt-link-abbreviated" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<b>Subject:</b> Re: [gmx-users] (no subject)<br>
</font><br>
</div>
<div>Hi<br>
<br>
You should compile your fftw with --enable-shared if you
want to link your gromacs installation to shared libraries
(which is the default in the latest versions). Check the
installation instructions in the website.<br>
<br>
Javier<br>
<br>
El 11/01/12 08:20, Anik Sen escribió:
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<font size="3"><span style="font-family: Times New
Roman;">Im having problems installing Gromacs. I
followed the GROMACS installation instructions as
suggested by justin</span></font>. But in vain. The
same error is coming again and again. Please suggest.<br>
<br>
The error file is given below:<br style="font-family:
Times New Roman;">
<font size="4"><br>
<br style="font-family: Times New Roman;">
</font>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>/usr/bin/ld:
/usr/local/lib/libfftw3.a(<wbr>plan-dft-r2c-3d.o):
relocation R_X86_64_32 against `a local symbol'
can not be used when making a shared object;
recompile with -fPIC</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>/usr/local/lib/libfftw3.a:
could not read symbols: Bad value</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>collect2: ld returned
1 exit status</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[3]: *** [<a
moz-do-not-send="true"
href="http://libmd_d.la/" target="_blank">libmd_d.la</a>]
Error 1</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[3]: Leaving
directory `/home/ganguly/Gromacs/<wbr>gromacs-4.5.5/src/mdlib'</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[2]: ***
[all-recursive] Error 1</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[2]: Leaving
directory `/home/ganguly/Gromacs/<wbr>gromacs-4.5.5/src'</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[1]: *** [all]
Error 2</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make[1]: Leaving
directory `/home/ganguly/Gromacs/<wbr>gromacs-4.5.5/src'</font></b></font></p>
<p style="text-align: left; font-family: Times New
Roman;"><font size="4"><b><font>make: ***
[all-recursive] Error 1</font></b></font></p>
<p style="text-align: left;"><br>
</p>
<p style="text-align: left;"><br>
</p>
Thanx in advance<br>
Anik<br>
</div>
<div style="font-size: 9pt; font-family:
'Calibri',sans-serif;">========================================================<br>
Anik Sen<br>
Student<br>
CSIR-Central Salt & Marine Chemicals Research
Institute,<br>
Gijubhai Badheka Marg.<br>
Bhavnagar, Gujarat 364002<br>
<div><img moz-do-not-send="true" alt="www.csmcri.org"
src="http://www.csmcri.org/images/logo.png"></div>
========================================================</div>
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<pre class="moz-signature" cols="72">--
Javier CEREZO BASTIDA
PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Phone: (+34)868887434</pre>
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<pre class="moz-signature" cols="72">--
Javier CEREZO BASTIDA
PhD Student
Physical Chemistry
Universidad de Murcia
Murcia (Spain)
Phone: (+34)868887434</pre>
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