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On 12/01/2012 5:44 PM, Anik Sen wrote:
<blockquote
cite="mid:BDE9D87D31C781498280133FD1BE69A51DD0DA25@EXCHANGE.csmcri.org"
type="cite">
<meta http-equiv="Content-Type" content="text/html;
charset=ISO-8859-1">
<div style="direction: ltr; font-family: Tahoma; color: rgb(0, 0,
0); font-size: 10pt;"><font size="6"><span style="font-family:
Times New Roman; font-weight: bold;">fftw-3.3 installation:</span></font><br>
<span style="font-weight: bold;">first gone to the fftw3.3
folder</span><br>
<br>
<font size="3">./configure --enable-threads --enable-float
--enable-sse --enable-shared --prefix
/home/ganguly/Gromacs/fftw3.3<br>
.<br>
.<br>
.<br>
make<br>
.<br>
.<br>
.<br>
make install</font><br>
<br>
Then gromacs 4.5.5 is being installed.<br>
installation:<br>
<span style="font-weight: bold;">first gone to the gromacs-4.5.5
folder</span><br>
<br>
<font size="3">./configure --disable-shared [also done for
./configure --enable-shared]<br>
.<br>
.<br>
.<br>
make<br>
.<br>
.<br>
.<br>
make install</font><br>
<br>
same error is coming. The error is given below:<br>
<br>
<font size="4"><span style="font-weight: bold;">After make
command, the last few lines are this type:::--</span></font><br>
<br>
<p class="Standard">make[3]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share/html'</p>
<p class="Standard">Making all in images</p>
<p class="Standard">make[3]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share/html/images'</p>
<p class="Standard">make[3]: Nothing to be done for `all'.</p>
<p class="Standard">make[3]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share/html/images'</p>
<p class="Standard">Making all in online</p>
<p class="Standard">make[3]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share/html/online'</p>
<p class="Standard">make[3]: Nothing to be done for `all'.</p>
<p class="Standard">make[3]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share/html/online'</p>
<p class="Standard">make[2]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share/html'</p>
<p class="Standard">make[2]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share'</p>
<p class="Standard">make[2]: Nothing to be done for `all-am'.</p>
<p class="Standard">make[2]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share'</p>
<p class="Standard">make[1]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/share'</p>
<p class="Standard">Making all in man</p>
<p class="Standard">make[1]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man'</p>
<p class="Standard">Making all in man1</p>
<p class="Standard">make[2]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man/man1'</p>
<p class="Standard">make[2]: Nothing to be done for `all'.</p>
<p class="Standard">make[2]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man/man1'</p>
<p class="Standard">Making all in man7</p>
<p class="Standard">make[2]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man/man7'</p>
<p class="Standard">make[2]: Nothing to be done for `all'.</p>
<p class="Standard">make[2]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man/man7'</p>
<p class="Standard">make[2]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man'</p>
<p class="Standard">make[2]: Nothing to be done for `all-am'.</p>
<p class="Standard">make[2]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man'</p>
<p class="Standard">make[1]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/man'</p>
<p class="Standard">make[1]: Entering directory
`/home/ganguly/Gromacs/gromacs-4.5.5'</p>
<p class="Standard">make[1]: Nothing to be done for `all-am'.</p>
<p class="Standard">make[1]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5'</p>
<p class="Standard" style="font-weight: bold;"><font size="4"><br>
</font></p>
<p class="Standard"><font style="font-weight: bold;" size="4">Then
after the make install command :-</font></p>
<p class="Standard"><br>
</p>
<p class="Standard">[ganguly@localhost gromacs-4.5.5]$ make
install</p>
<p class="Standard">Making install in include</p>
.<br>
.<br>
.<br>
.<br>
.<br>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/futil.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gbutil.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gen_ad.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/genborn.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_ana.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_arpack.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_blas.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_cyclecounter.h':
Permission denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_fatal.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_fft.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_ga2la.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_lapack.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_matrix.h': Permission
denied</p>
<p class="Standard">/usr/bin/install: cannot remove
`/usr/local/gromacs/include/gromacs/gmx_parallel_3dfft.h':
Permission denied</p>
<p class="Standard">make[3]: *** [install-pkgincludeHEADERS]
Error 1</p>
<p class="Standard">make[3]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/include'</p>
<p class="Standard">make[2]: *** [install-am] Error 2</p>
<p class="Standard">make[2]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/include'</p>
<p class="Standard">make[1]: *** [install-recursive] Error 1</p>
<p class="Standard">make[1]: Leaving directory
`/home/ganguly/Gromacs/gromacs-4.5.5/include'</p>
<p class="Standard">make: *** [install-recursive] Error 1</p>
<p class="Standard">[ganguly@localhost gromacs-4.5.5]$</p>
</div>
</blockquote>
<br>
I updated <a
href="http://www.gromacs.org/Downloads/Installation_Instructions#Final_Installation">http://www.gromacs.org/Downloads/Installation_Instructions#Final_Installation</a>
to address this issue.<br>
<br>
Mark<br>
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