<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div>There is a solution in this mailing list sometime before: <br></div><div>mv md.log to some other folder and copy it back.<br></div><div>Jianguo<br></div> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div dir="ltr"> <font face="Arial" size="2"> <hr size="1"> <b><span style="font-weight:bold;">From:</span></b> lina <lina.lastname@gmail.com><br> <b><span style="font-weight: bold;">To:</span></b> Discussion list for GROMACS users <gmx-users@gromacs.org> <br> <b><span style="font-weight: bold;">Sent:</span></b> Friday, 13 January 2012, 18:51<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [gmx-users] Failed to lock: md.log. No locks available.<br> </font> </div> <br>On Fri, Jan
13, 2012 at 4:57 PM, Mark Abraham <<a ymailto="mailto:Mark.Abraham@anu.edu.au" href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>> wrote:<br>> On 13/01/2012 7:08 PM, lina wrote:<br>>><br>>> Hi,<br>>><br>>> Failed to lock: md.log. No locks available.<br>><br>><br>> mdrun locks various files at various points. If it can't then GROMACS won't<br>> continue, but the problem lies with the file system, and not with GROMACS.<br>> Possibly some phantom process still thinks it owns the file.<br><br>It's something relevant to the server.<br>I am not experienced to figure it out even did some rough try.<br>will drop an email to administrator.<br><br>Thanks,<br><br>><br>> Mark<br>><br>><br>>><br>>> still the same problem I met before,<br>>><br>>> once I terminated, resume not work, there is a md.log file.<br>>><br>>> $ mount<br>>> /dev/sda1 on / type
ext3 (rw)<br>>> none on /proc type proc (rw)<br>>> none on /sys type sysfs (rw)<br>>> none on /dev/pts type devpts (rw,gid=5,mode=620)<br>>> usbfs on /proc/bus/usb type usbfs (rw)<br>>> none on /dev/shm type tmpfs (rw)<br>>> none on /proc/sys/fs/binfmt_misc type binfmt_misc (rw)<br>>> sunrpc on /var/lib/nfs/rpc_pipefs type rpc_pipefs (rw)<br>>> honeydewlocal:/vol/hpc_vol/HomeHPC on /home type nfs<br>>> (rw,rsize=32k,wsize=32k,intr,hard,tcp,addr=192.168.5.83)<br>>><br>>> The /home is mounting on the last one.<br>>><br>>> CPU: 8 Intel(R) Xeon(R) Dual-Core 3.33 Ghz<br>>> Memory: 114GB RAM<br>>> HDD Size: 744GB<br>>> OS: CentOS 4 (64-bits)<br>>><br>>> Thanks for any suggestions,<br>>><br>>> any additional info you need please let me know,<br>>><br>>> Best regards,<br>><br>><br>> --<br>> gmx-users mailing list
<a ymailto="mailto:gmx-users@gromacs.org" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>> <a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>> Please search the archive at<br>> <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>> Please don't post (un)subscribe requests to the list. Use the www interface<br>> or send it to <a ymailto="mailto:gmx-users-request@gromacs.org" href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>> Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br>--<br>gmx-users mailing list <a ymailto="mailto:gmx-users@gromacs.org"
href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before posting!<br>Please don't post (un)subscribe requests to the list. Use the<br>www interface or send it to <a ymailto="mailto:gmx-users-request@gromacs.org" href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/Support/Mailing_Lists</a><br><br><br> </div> </div> </div></body></html>