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On 18/01/2012 8:35 PM, Mr Bernard Ramos wrote:
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<div _yuid="yui_3_1_1_3_132687914105880">Hi
everyone!</div>
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<div>On this page</div>
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<a moz-do-not-send="true"
href="http://manual.gromacs.org/online/g_hbond.html"
target="_blank" rel="nofollow"><span
class="yshortcuts" id="lw_1326879228_0">http://manual.gromacs.org/online/g_hbond.html</span></a></div>
<div _yuid="yui_3_1_1_3_132687914105881"><br>
there is an option -r2 when using g_hbond. What
is this r2? I can't find it in the Gromacs
manual. option -a is the angle H-O-O, option -r
is the O-O distance which can be switched to H-A
by using the "-da no". Need help on what is -r2
(could this be for specifying a third criterion
for the for distance O-H in addition to the
angle cut-off and O-O distance cut-off</div>
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<br>
Apparently nobody knows. Someone will need to look in the code to
find out - probably you :-). Good luck!<br>
<br>
Mark<br>
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