<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
Removing files in /usr/local/gromacs has no bearing on the contents of /usr/local/bin. If you did 'make links' at the end of the installation, you will have dead links in /usr/local/bin that need to be removed, as well.<br>
<br>
-Justin<br></blockquote><div><br><br>Dear Justin,<br><br>Thanks a lot for your insight.<br><br>I did links in the end so there is links in <b>/usr/local/bin</b>. After uninstall I still have dead links with <b>/usr/local/bin. </b>could you help me how to remove this<b> </b>in<b> </b><b>/usr/local/bin</b>.<br>
<br><br><br><br><br> </div><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="im">
<br>
<br>
try make uninstall in the directory where you used make install<br>
before. like Path_to//gromacs-4.5.5<br>
and then make distclean<br>
for a totally clear re-installation, removed the /gromac-4.5.5 and<br>
<br>
re-untar the gromacs-4.5.5.tar.gz<br>
<br>
before that, further check the lib and bin have totally removed or not.<br>
<br>
<br>
Sure. I will do now<br>
<br>
<br>
Which OS you are working on?<br>
<br>
<br>
Linux (CentOS 5.7)<br>
<br>
Thanks a lot.<br>
<br>
<br>
><br>
><br>
> On Tue, Jan 24, 2012 at 2:31 AM, lina <<a href="mailto:lina.lastname@gmail.com" target="_blank">lina.lastname@gmail.com</a><br></div><div class="im">
<mailto:<a href="mailto:lina.lastname@gmail.com" target="_blank">lina.lastname@gmail.<u></u>com</a>>> wrote:<br>
>><br>
>> On 24 Jan, 2012, at 1:53, Spring buds <<a href="mailto:winterhot82@gmail.com" target="_blank">winterhot82@gmail.com</a><br></div><div><div class="h5">
<mailto:<a href="mailto:winterhot82@gmail.com" target="_blank">winterhot82@gmail.com</a>><u></u>> wrote:<br>
>><br>
>> > Dear Gromacs users,<br>
>> ><br>
>> > Greetings!!!<br>
>> ><br>
>> > I am very new users and I am trying to install grmacs 4.5.5 or<br>
3.3.3 for<br>
>> > past four days. But still I am not able to. So I would like to<br>
ask some<br>
>> > questions which are below.<br>
>> ><br>
>> ><br>
>> > 1.My laptop is a dual core, which means two processors?.So<br>
should I need<br>
>> > to install MPI?<br>
>> ><br>
>> --enable threads<br>
>><br>
>> > 2.I installed gromacs 4.5.5 with mistakes. To remove<br>
installing, I used<br>
>> > the "which gromacs" and it shows as "/usr/bin/which: no mdrun in<br>
>> ><br>
(/usr/kerberos/bin:/usr/local/<u></u>bin:/usr/bin:/bin:/usr/X11R6/<u></u>bin:/home/Malai/bin)".<br>
>> > However, I used "rm -rf /usr/local/gromacs" to remove<br>
installing I still can<br>
>> > see tha gromacs files with red background in "/usr/local/bin".<br>
Could you<br>
>> > tell me I removed the gromacs installing?<br>
>><br>
>> You have not.<br>
>><br>
>> ><br>
>> > 3.Could you please tell me the very simple steps for<br>
installatios, since<br>
>> > I am a novice.<br>
>><br>
>> <a href="http://www.gromacs.org/Downloads/Installation_Instructions" target="_blank">http://www.gromacs.org/<u></u>Downloads/Installation_<u></u>Instructions</a><br>
>><br>
>> ><br>
>> > Many thanks in advance for your time and help.<br>
>> ><br>
>> > Huang Malai<br>
>> > --<br>
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<br>
-- <br>
==============================<u></u>==========<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | <a href="tel:%28540%29%20231-9080" value="+15402319080" target="_blank">(540) 231-9080</a><br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
<br>
==============================<u></u>==========<div class="HOEnZb"><div class="h5"><br>
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