<span class="Apple-style-span" style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">I&#39;ve having some problems with use of the option &#39;-fitall&#39;.</span><div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">

<br></div><div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">The command I&#39;m using is:</div><div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">

g_rms -hidden -fitall -s ../topol_amber.tpr -f ../amber99sb_skip10.xtc -f2 ../amber99sb_skip10.xtc -m rmsd.xpm<br><br>But a diff with the rmsd.xpm file I got without using &#39;-fitall&#39; reveals that the files are identical. </div>

<div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)"><br></div><div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Furthermore, the rmsd.xpm file represents a non-symetric matrix, which is not what I expected... Anyone has a clue of what&#39;s happening?</div>

<div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)"><br></div><div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">Thanks in advance,</div><div style="font-family:arial,sans-serif;font-size:13px;background-color:rgb(255,255,255)">

Víctor</div><div><br></div>-- <br><br>Víctor Gil Sepúlveda<br>E. Informatica - FIB - UPC<br>