I have used "mdrun -v deffnm em" command for energy minimization just after running the command i.e., given below:<br> <font size="3"><font face="Arial"><br> </font></font>perl <a href="http://inflategro.pl">inflategro.pl</a> system.gro 4 DPPC 14 system_inflated.gro 5 area.dat<br>
But When I run the command which is given below:<br><font face="Arial"><font size="3">Eeeeek! No confout.gro at all!<br><br>Died at <a href="http://inflategro.pl">inflategro.pl</a> line 81.<br><br>Please guide me to troubleshoot the error.<br>
Also clarify the lines given in tutorial "</font></font><font face="Arial"><font size="3">Note how many lipids were deleted and update the <code>[ molecules ]</code>
directive of your topology accordingly. Run energy minimization.
Then, scale down the lipids by a factor of 0.95 (assuming you have used
default names, the result of the minimization is called "confout.gro"):".</font></font><br><br>