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On 25/01/2012 12:54 AM, Spring buds wrote:
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cite="mid:CANDSGMF4zBcU+d-gZ6aM1n6qGVaR72QPi61_ZB3wmSp+w_sMsg@mail.gmail.com"
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Removing files in /usr/local/gromacs has no bearing on the
contents of /usr/local/bin. If you did 'make links' at the
end of the installation, you will have dead links in
/usr/local/bin that need to be removed, as well.<br>
<br>
-Justin<br>
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<br>
Dear Justin,<br>
<br>
Thanks a lot for your insight.<br>
<br>
I did links in the end so there is links in <b>/usr/local/bin</b>.
After uninstall I still have dead links with <b>/usr/local/bin.
</b>could you help me how to remove this<b> </b>in<b> </b><b>/usr/local/bin</b>.<br>
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</blockquote>
<br>
1. cd /usr/local/bin<br>
2. ls -l<br>
3. look for broken links<br>
4. sudo rm <names of broken links><br>
<br>
Hint: the majority of them will be named g_xxx so that makes for
easy wildcarding.<br>
<br>
Mark<br>
<br>
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cite="mid:CANDSGMF4zBcU+d-gZ6aM1n6qGVaR72QPi61_ZB3wmSp+w_sMsg@mail.gmail.com"
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<div class="im">
<br>
<br>
try make uninstall in the directory where you used make
install<br>
before. like Path_to//gromacs-4.5.5<br>
and then make distclean<br>
for a totally clear re-installation, removed the
/gromac-4.5.5 and<br>
<br>
re-untar the gromacs-4.5.5.tar.gz<br>
<br>
before that, further check the lib and bin have totally
removed or not.<br>
<br>
<br>
Sure. I will do now<br>
<br>
<br>
Which OS you are working on?<br>
<br>
<br>
Linux (CentOS 5.7)<br>
<br>
Thanks a lot.<br>
<br>
<br>
><br>
><br>
> On Tue, Jan 24, 2012 at 2:31 AM, lina <<a
moz-do-not-send="true"
href="mailto:lina.lastname@gmail.com" target="_blank">lina.lastname@gmail.com</a><br>
</div>
<div class="im"> <mailto:<a moz-do-not-send="true"
href="mailto:lina.lastname@gmail.com" target="_blank">lina.lastname@gmail.com</a>>>
wrote:<br>
>><br>
>> On 24 Jan, 2012, at 1:53, Spring buds <<a
moz-do-not-send="true"
href="mailto:winterhot82@gmail.com" target="_blank">winterhot82@gmail.com</a><br>
</div>
<div>
<div class="h5"> <mailto:<a moz-do-not-send="true"
href="mailto:winterhot82@gmail.com" target="_blank">winterhot82@gmail.com</a>>>
wrote:<br>
>><br>
>> > Dear Gromacs users,<br>
>> ><br>
>> > Greetings!!!<br>
>> ><br>
>> > I am very new users and I am trying to
install grmacs 4.5.5 or<br>
3.3.3 for<br>
>> > past four days. But still I am not
able to. So I would like to<br>
ask some<br>
>> > questions which are below.<br>
>> ><br>
>> ><br>
>> > 1.My laptop is a dual core, which
means two processors?.So<br>
should I need<br>
>> > to install MPI?<br>
>> ><br>
>> --enable threads<br>
>><br>
>> > 2.I installed gromacs 4.5.5 with
mistakes. To remove<br>
installing, I used<br>
>> > the "which gromacs" and it shows as
"/usr/bin/which: no mdrun in<br>
>> ><br>
(/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/Malai/bin)".<br>
>> > However, I used "rm -rf
/usr/local/gromacs" to remove<br>
installing I still can<br>
>> > see tha gromacs files with red
background in "/usr/local/bin".<br>
Could you<br>
>> > tell me I removed the gromacs
installing?<br>
>><br>
>> You have not.<br>
>><br>
>> ><br>
>> > 3.Could you please tell me the very
simple steps for<br>
installatios, since<br>
>> > I am a novice.<br>
>><br>
>> <a moz-do-not-send="true"
href="http://www.gromacs.org/Downloads/Installation_Instructions"
target="_blank">http://www.gromacs.org/Downloads/Installation_Instructions</a><br>
>><br>
>> ><br>
>> > Many thanks in advance for your time
and help.<br>
>> ><br>
>> > Huang Malai<br>
>> > --<br>
>> > gmx-users mailing list <a
moz-do-not-send="true"
href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br>
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<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a moz-do-not-send="true" href="http://vt.edu"
target="_blank">vt.edu</a> | <a moz-do-not-send="true"
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href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin"
target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>
<br>
========================================
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