<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div><span>You can load your gromacs trajectory file in VMD 1.9 and then use Volume-map tool in the "analysis" section to calculate the isodensity surface. The GUI of the Volume-map tool is pretty user-friendly.</span></div><div><br></div> <div style="font-size: 12pt; font-family: 'times new roman', 'new york', times, serif; "> <div style="font-size: 12pt; font-family: 'times new roman', 'new york', times, serif; "> <div dir="ltr"> <font size="2" face="Arial"> <hr size="1"> <b><span style="font-weight:bold;">From:</span></b> Nidhi Katyal <nidhikatyal1989@gmail.com><br> <b><span style="font-weight: bold;">To:</span></b> gmx-users@gromacs.org <br> <b><span style="font-weight: bold;">Sent:</span></b> Saturday, January 28, 2012 11:56 AM<br> <b><span style="font-weight: bold;">Subject:</span></b> [gmx-users]
isodensity surface<br> </font> </div> <br>
<meta http-equiv="x-dns-prefetch-control" content="off"><div id="yiv1766684651"><br>Dear all,<br><div class="yiv1766684651gmail_quote"><div>Is there a way to create and visualize isodensity surfaces in Gromacs or any tool which can work on gromacs compatible file?</div><div>Any suggestion would be highly welcomed.</div>
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