I am using single CPU for this simulation.<br><br><div class="gmail_quote">On Tue, Jan 31, 2012 at 11:09 AM, Emanuel Birru <span dir="ltr"><<a href="mailto:Emanuel.Birru@monash.edu">Emanuel.Birru@monash.edu</a>></span> wrote:<br>
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<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma","sans-serif"" lang="EN-US"> <a href="mailto:gmx-users-bounces@gromacs.org" target="_blank">gmx-users-bounces@gromacs.org</a> [mailto:<a href="mailto:gmx-users-bounces@gromacs.org" target="_blank">gmx-users-bounces@gromacs.org</a>]
<b>On Behalf Of </b>Anushree Tripathi<br>
<b>Sent:</b> Tuesday, 31 January 2012 4:11 PM<br>
<b>To:</b> Discussion list for GROMACS users<br>
<b>Subject:</b> [gmx-users] problem with energy minimization<u></u><u></u></span></p>
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<p class="MsoNormal">When I run the command (i.e., <span style="font-size:10.0pt;font-family:Courier">
mdrun -v -deffnm em)</span> for energy minimization.<br>
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I am getting the error:<br>
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There is no domain decomposition for 4 nodes that is compatible with the given box and a minimum cell size of 4.07513 nm.<br>
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Please guide me.<u></u><u></u></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1f497d"><u></u> <u></u></span></p>
</div></div><p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#548dd4">Did you run it on a cluster? Or on a multiple CPUs?
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