Dear Gromacs users,<br><br>I want to use the Gromacs analysis tools for analyzing Namd output files (*.dcd files) I just installed Gromacs 4.5.4 and it works well. In addition I installed VMD 1.9 and set up VMD_PLUGIN_PATH=/home/vmd-1.9/plugins/LINUXAMD64/molfile/ (Here it is located the dcdplugin.so ) <br>
<br>I verified that VMD_PLUGIN_PATH is pointing out to the right folder. However when I run for example <br><br>g_rmsf_d -f file.dcd -s file.pdb <br><br>I got the following error<br><br>The file format of file.dcd is not a known trajectory format to GROMACS. Please make sure that the file is a trajectory!<br>
<br>GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins.<br>This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD.<br><br>No plugin for dcd found<br>
<br>Am I doing something wrong? Do I need to do something else?<br><br>Any help and advise will be highly appreciate it<br><br>-- <br>Cheers, <br> <br>Paul<br><br><br>