<div><span id="result_box" lang="en" class="short_text"><span class="hps">Hi,</span></span></div>
<div><span lang="en" class="short_text"><span class="hps">The problem</span> might <span class="hps">caused by</span> <span class="hps">X58</span> <span class="hps">chipset.</span></span></div>
<div><span lang="en" class="short_text"><span class="hps"></span></span><span id="result_box" lang="en" class="short_text"><span class="hps">Now I am using ubuntu. Which operating</span> <span class="hps">system</span> <span class="hps">do you recommend?</span></span><br>
</div>
<div class="gmail_quote">2012/2/4 David van der Spoel <span dir="ltr"><<a href="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a>></span><br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">
<div class="im">On 2012-02-03 23:49, ahmet yıldırım wrote:<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">Dear Mark,<br><br><br>Believe me, I tried all methods that you said but unfortunately the<br>result doesnt change :(<br>
</blockquote><br></div>It used to be like this that GROMACS ran more efficient on AMD cpus than the official AMD burn-in code, and therefore also hotter. You could run gromacs on fewer cores to see if that helps, but it seems like a hardware problem. Have any warranty on your computers?<br>
<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote"><br>2012/2/4 Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.au</a><br>
<mailto:<a href="mailto:Mark.Abraham@anu.edu.au" target="_blank">Mark.Abraham@anu.edu.<u></u>au</a>>>
<div class="im"><br><br> On 4/02/2012 8:24 AM, ahmet yıldırım wrote:<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote"> Dear users,<br><br> I am using ubuntu 11.1 (64 bit). The Ubuntu normally runs when I<br> dont run the Gromacs program. i.e there is not heating problem.<br>
But the CPU is excessive heating (82 degree) when I run the gromacs.<br></blockquote><br> There are various "stress test" programs you can get if you Google<br> around. I expect these will produce the same symptoms.<br>
<br><br></div>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote"> I am using the all cores at 100%. Now I have 2 PC.I use them
<div class="im"><br> separately<br> 1.first: It has Intel i7 920 CPU and Asus P6T SE motherboard<br> 2.second: It has Intel I7 960 and Gıgabyte x58A-UD5 LGA 1366<br> motherboard<br> I have the problem of warming/overheating on both computers. I<br>
could not figure out this problem for two weeks :(<br> By the way:<br> -I dont use an older compiler to get the binary. I am using gcc<br> 4.6 and I am using Gromacs 4.5.4<br> -I watch the temperatures by "lm sensor" program<br>
-I installed ubuntu 32-bit but the result didnt change again<br> -I have sufficient cooling on both PC<br></div></blockquote>
<div class="im"><br> I'd say this is evidence that you don't have sufficient cooling.<br><br><br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote"> It is likely something related to the program because no problem<br> with any hardware related to computers according to experts say.<br>
</blockquote><br> If things are installed correctly. For example, cheap thermal paste<br> between the CPU and heat sink can cause these symptoms.<br><br><br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote"><br> what do you suggest? :(<br></blockquote><br> Get more cooling. Maybe lower the clock speed (if possible). Run a<br>
less efficient MD code!<br><br> Mark<br><br><br></div>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote"><br> *atk0110-acpi-0
<div class="im"><br> Adapter: ACPI interface<br> Vcore Voltage: +1.22 V (min = +0.80 V, max = +1.60 V)<br> +3.3 Voltage: +3.31 V (min = +2.97 V, max = +3.63 V)<br> +5 Voltage: +5.00 V (min = +4.50 V, max = +5.50 V)<br>
+12 Voltage: +12.03 V (min = +10.20 V, max = +13.80 V)<br> CPU FAN Speed: 2163 RPM (min = 600 RPM)<br> CHASSIS1 FAN Speed: 0 RPM (min = 600 RPM)<br> CHASSIS2 FAN Speed: 2033 RPM (min = 600 RPM)<br>
POWER FAN Speed: 0 RPM (min = 0 RPM)<br> CPU Temperature: +82.0°C (high = +60.0°C, crit = +75.0°C)<br> MB Temperature: +45.0°C (high = +45.0°C, crit = +75.0°C)<br><br> radeon-pci-0200<br> Adapter: PCI adapter<br>
</div> temp1: +60.5°C *<br><br><br> --<br> Ahmet Yıldırım<br><br><br><br></blockquote>
<div class="im"><br><br> --<br> gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br></div> <mailto:<a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a>>
<div class="im"><br> <a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/<u></u>mailman/listinfo/gmx-users</a><br> Please search the archive at<br> <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/<u></u>Support/Mailing_Lists/Search</a> before posting!<br>
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<div class="im"><br> Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/<u></u>Support/Mailing_Lists</a><br><br><br><br><br>--<br>Ahmet Yıldırım<br><br><br>
<br></div></blockquote><span class="HOEnZb"><font color="#888888"><br><br>-- <br>David van der Spoel, Ph.D., Professor of Biology<br>Dept. of Cell & Molec. Biol., Uppsala University.<br>Box 596, 75124 Uppsala, Sweden. Phone: <a href="tel:%2B46184714205" target="_blank" value="+46184714205">+46184714205</a>.<br>
<a href="mailto:spoel@xray.bmc.uu.se" target="_blank">spoel@xray.bmc.uu.se</a> <a href="http://folding.bmc.uu.se/" target="_blank">http://folding.bmc.uu.se</a></font></span>
<div class="HOEnZb">
<div class="h5"><br>-- <br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" target="_blank">gmx-users@gromacs.org</a><br><a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/<u></u>mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/<u></u>Support/Mailing_Lists/Search</a> before posting!<br>Please don't post (un)subscribe requests to the list. Use the www interface or send it to <a href="mailto:gmx-users-request@gromacs.org" target="_blank">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/Support/Mailing_Lists" target="_blank">http://www.gromacs.org/<u></u>Support/Mailing_Lists</a><br></div></div></blockquote></div><br><br clear="all"><br>-- <br>Ahmet Yıldırım<br>
<br>