Thank you!!!<br><br>
<div class="gmail_quote">On Mon, Feb 6, 2012 at 1:04 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">
<div class="im"><br><br>Алексей Раевский wrote:<br>
<blockquote style="BORDER-LEFT:#ccc 1px solid;MARGIN:0px 0px 0px 0.8ex;PADDING-LEFT:1ex" class="gmail_quote">Hi<br>Is it possible to use amber forcefield with lipid parameters like it<br>was done with gmx in "KALP-15 in DPPC" tutorial?<br>
I have to use amber forcefield as it is neccessary for parametrization<br>of my ligand and its stecking interactions.<br><br></blockquote><br></div>If you can find suitable parameters for you lipids, then the workflow is likely similar, though you may not have to create any sort of hybrid force field if the atom types, bonded parameters, etc are taken from an existing Amber force field.<br>
<br>-Justin<br><br>-- <br>==============================<u></u>==========<br><br>Justin A. Lemkul<br>Ph.D. Candidate<br>ICTAS Doctoral Scholar<br>MILES-IGERT Trainee<br>Department of Biochemistry<br>Virginia Tech<br>Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu/" target="_blank">vt.edu</a> | <a href="tel:%28540%29%20231-9080" target="_blank" value="+15402319080">(540) 231-9080</a><br><a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
<br>==============================<u></u>==========
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