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<div>Hey Paul,</div>
<div><br>
</div>
<div>cant help you with the plugin issue, but <span class="Apple-style-span" style="-webkit-tap-highlight-color: rgba(26, 26, 26, 0.292969); -webkit-composition-fill-color: rgba(175, 192, 227, 0.230469); -webkit-composition-frame-color: rgba(77, 128, 180, 0.230469); ">have
you instead tried loading the dcd trajectory into vmd and save it as trr? </span></div>
<div><br>
Cheers,</div>
<div>Micha</div>
<div><br>
On 7 Feb 2012, at 18:18, "PAUL NEWMAN" <<a href="mailto:paulclizana@gmail.com">paulclizana@gmail.com</a>> wrote:<br>
<br>
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<blockquote type="cite">
<div>Dear Gromacs users,<br>
<br>
This is my second email since I tried the previous advises and did NOT work. <br>
<br>
I want to use the Gromacs analysis tools for analyzing Namd output files (*.dcd files) I installed Gromacs 4.5.4 (64 bits) and it works well. In addition I installed VMD 1.9 (64 bits) and set up VMD_PLUGIN_PATH=/home/vmd-1.9/plugins/LINUXAMD64/molfile/ (Here
it is located the dcdplugin.so ) <br>
<div id=":1al"><br>
I verified that VMD_PLUGIN_PATH is pointing out to the right folder. However when I run for example
<br>
<br>
<b>g_rmsf_d -f file.dcd -s file.pdb </b> <br>
<br>
I got the following error<br>
<br>
<b>The file format of file.dcd is not a known trajectory format to GROMACS. Please make sure that the file is a trajectory!<br>
<br>
GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins.</b>
<b><br>
This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD.<br>
<br>
No plugin for dcd found</b><br>
<br>
<br>
Can anyone tell me if Gromacs really works with the VMD pulgin? <br>
<br>
I will highly appreciate to know it so I can start looking for another alternatives.<br>
<br>
Thanks so much<br>
<br>
<div class="yj6qo ajU">
<div id=":1bd" class="ajR" tabindex="0"><img class="ajT" src="cid:images/cleardot.gif"></div>
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<br>
-- <br>
Cheers, <br>
<br>
Paul<br>
<br>
<br>
</div>
</blockquote>
<blockquote type="cite">
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