Hi GROMACS user,<br> With the help of command <br>genbox -ci <molecule name> -nmol <molecule no required><br> -o <out put file> -box <dimension > <br> I get the desired no of added protein to cell.<br>
But I found that some part of protein is outside <br>the cell ..<br> Is such system is good for further molecular dynamics study ...?? <br><br> After energy minimisation some time the protein is leaving the cell,<br>
Can I used these last frame for my further position restrained MD <br>
study...???<br> Thank you for help <br><br> <br>