For example, if I want to simulate how <span lang="en"><span>Membrane phospholipid</span> <span>bilayer
form its configuration in water, and want to use CG model and implicit
solvent, then I need the heads of these phospholipid molecules to be
hydrophilic and their </span></span>tail to be hydrophobic. How can I
specify parameter of these particles to make them have these different
properties in implicit solvent?<br>
It just an example. Hydrophobic also play important role in protein and
DNA folding. That's why I want to make hydrophobic work in implicit
solvent. Thank you very much for your help!<br><br>Bo<div><div class="im"><br><br>On 8/03/2012 2:59 AM, bo.shuang wrote:<br>
> Hi, all,<br>
><br>
> Is that possible to define hydrophobic or hydrophilic properties in<br>
> implicit solvent? Which parameter control these properties of<br>
> particles? Thank you!<br>
<br></div></div>
For what purpose? Simulations don't care about such labels.<br>
<br>
Mark