<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:12pt"><div><span>Dear All,</span></div><div><span></span> </div><div><span>My command is ./configure --disable-threads</span></div><div><span></span> </div><div><span>The error message are as following. I am looking forward to getting a message from you on how to avoid the error message.</span></div><div><span></span> </div><div><span>Cheers,</span></div><div><span></span> </div><div><span>Dialing</span></div><div><span> </span></div><div><span>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">/bin/sh ../../../libtool
--tag=CC<span style="mso-spacerun: yes;"> </span>--mode=compile cc
-DHAVE_CONFIG_H -I. -I../../../src -I/usr/include/libxml2<span style="mso-spacerun: yes;"> </span>-I../../../include<span style="mso-spacerun: yes;"> </span>-O3 -fomit-frame-pointer -finline-functions
-Wall -Wno-unused -msse2 -funroll-all-loops -std=gnu99 -fexcess-precision=fast
-MT sdot.lo -MD -MP -MF .deps/sdot.Tpo -c -o sdot.lo sdot.c<?xml:namespace prefix = o ns = "urn:schemas-microsoft-com:office:office" /><o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[4]: execvp: /bin/sh: Bad
address<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">../../../libtool: fork:
retry: Resource temporarily unavailable<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">../../../libtool: fork: retry:
Resource temporarily unavailable<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">../../../libtool: fork:
retry: Resource temporarily unavailable<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">../../../libtool: fork:
retry: Resource temporarily unavailable<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">../../../libtool: fork:
Resource temporarily unavailable<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">Makefile:338: recipe for
target `sdot.lo' failed<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[4]: *** [sdot.lo] Error
254<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[4]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/gmxlib/gmx_blas'<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">Makefile:599: recipe for
target `all-recursive' failed<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[3]: *** [all-recursive]
Error 1<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[3]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/gmxlib'<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">Makefile:302: recipe for
target `all-recursive' failed<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[2]: *** [all-recursive]
Error 1<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[2]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">Makefile:238: recipe for
target `all' failed<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[1]: *** [all] Error 2<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make[1]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">Makefile:347: recipe for
target `all-recursive' failed<o:p></o:p></font></span></div><div>
</div><div style="margin: 0cm 0cm 0pt;" class="MsoNormal"><span style="font-size: 12pt;"><font face="Calibri">make: *** [all-recursive]
Error 1<o:p></o:p></font></span></div><div>
</span></div><div><br></div> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div dir="ltr"> <font size="2" face="Arial"> <div style="margin: 5px 0px; padding: 0px; border: 1px solid rgb(204, 204, 204); height: 0px; line-height: 0; font-size: 0px;" class="hr" contentEditable="false" readonly="true"></div> <b><span style="font-weight: bold;">From:</span></b> Mark Abraham <Mark.Abraham@anu.edu.au><br> <b><span style="font-weight: bold;">To:</span></b> Discussion list for GROMACS users <gmx-users@gromacs.org> <br> <b><span style="font-weight: bold;">Sent:</span></b> Saturday, 10 March 2012 2:07 PM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [gmx-users] error message during make after gtomacs configuration<br> </font> </div> <br><meta content="off" http-equiv="x-dns-prefetch-control"><div
id="yiv1605284085">
<div>
On 10/03/2012 2:50 PM, Dialing Pretty wrote:
<blockquote type="cite">
<div style="color: rgb(0, 0, 0); font-family: times new roman, new york, times, serif; font-size: 12pt; background-color: rgb(255, 255, 255);">
<div>
</div>
<div><span style="color: black;" lang="EN-US">Dear All,</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">After I run the Gromacs 4.5.5 configuration (in
this step there is no error), I run
make, but I meet the following error messages.</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Will you please
give me some suggestions on how to avoid
these error messages?</span></div>
</div>
</blockquote>
<br>
No. You haven't told us your configure command, so we're not going
to guess what you're doing wrong.<br>
<br>
Mark<br>
<br>
<blockquote type="cite">
<div style="color: rgb(0, 0, 0); font-family: times new roman, new york, times, serif; font-size: 12pt; background-color: rgb(255, 255, 255);">
<div><span style="color: black;" lang="EN-US"></span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Cheers,</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Dialing</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:151:5: error:
‘smalloc_GetCurrentProcessorNumberEx’ undeclared (first use
in this function)</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:151:5: note: each undeclared
identifier
is reported only once for each function it appears in</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:151:44: error:
‘func_GetCurrentProcessorNumberEx_t’ undeclared (first use
in this function)</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:151:79: error: expected ‘;’
before
‘GetProcAddress’</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:152:5: error:
‘smalloc_GetNumaProcessorNodeEx’ undeclared (first use in
this function)</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:152:39: error:
‘func_GetNumaProcessorNodeEx_t’ undeclared (first use in
this function)</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:152:69: error: expected ‘;’
before
‘GetProcAddress’</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c: In function ‘ReturnHeapHandle’:</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:246:5: error: ‘PROCESSOR_NUMBER’
undeclared (first use in this function)</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:246:22: error: expected ‘;’
before
‘CurrentProcessorNumber’</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:285:5: warning: implicit
declaration of
function ‘smalloc_GetCurrentProcessorNumberEx’</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:285:42: error:
‘CurrentProcessorNumber’
undeclared (first use in this function)</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:287:5: warning: implicit
declaration of
function ‘smalloc_GetNumaProcessorNodeEx’</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">numa_malloc.c:324:9: warning: implicit
declaration of
function ‘HeapSetInformation’</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Makefile:332: recipe for target
`numa_malloc.lo'
failed</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[4]: *** [numa_malloc.lo] Error 1</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[4]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/gmxlib/thread_mpi'</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Makefile:599: recipe for target `all-recursive'
failed</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[3]: *** [all-recursive] Error 1</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[3]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/gmxlib'</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Makefile:302: recipe for target `all-recursive'
failed</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[2]: *** [all-recursive] Error 1</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[2]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Makefile:238: recipe for target `all' failed</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[1]: *** [all] Error 2</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make[1]: Leaving directory
`/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">Makefile:347: recipe for target `all-recursive'
failed</span></div>
<div>
</div>
<div><span style="color: black;" lang="EN-US">make: *** [all-recursive] Error 1</span></div>
<div>
</div>
</div>
<br>
<fieldset class="yiv1605284085mimeAttachmentHeader"></fieldset>
<br>
</blockquote>
<br>
</div>
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