<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:14pt"><div><span>Hi Mark,</span></div><div><span></span> </div><div><span>If for Gromacs I use disable --disable-threads, for fftw3 show I also use --disable-threads?</span></div><div><span></span> </div><div><span>Wholley<var id="yui-ie-cursor"></var></span></div><div><br></div> <div style="font-family: times new roman, new york, times, serif; font-size: 14pt;"> <div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"> <div dir="ltr"> <font size="2" face="Arial"> <div style="margin: 5px 0px; padding: 0px; border: 1px solid rgb(204, 204, 204); height: 0px; line-height: 0; font-size: 0px;" class="hr" contentEditable="false" readonly="true"></div> <b><span style="font-weight: bold;">From:</span></b> Mark Abraham <Mark.Abraham@anu.edu.au><br> <b><span style="font-weight: bold;">To:</span></b>
Discussion list for GROMACS users <gmx-users@gromacs.org> <br> <b><span style="font-weight: bold;">Sent:</span></b> Sunday, 11 March 2012 11:43 AM<br> <b><span style="font-weight: bold;">Subject:</span></b> Re: [gmx-users] gromacs 4.5.5 cygwin installation error message<br> </font> </div> <br>On 11/03/2012 12:20 PM, Peter C. Lai wrote:<br>> Is fftw3 properly installed in /usr/local/lib?<br><br>And of the right precision, like reading the installation guides will warn you...<br><br>Mark<br><br>> <br>> On 2012-03-10 03:51:12PM -0800, Wholly Peach wrote:<br>>> Dear All,<br>>> For Gromacs installation, my configure command is:<br>>> ./configure --enable-shared LDFLAGS='-L/usr/local/lib' --disable-threads.<br>>> After make, the error message is as following.<br>>> I am looking forward to getting a reply from you on how to avoid the error message.<br>>> Wholly<br>>>
.....<br>>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bb5): undefined reference to `_fftwf_destroy_plan'<br>>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bcb): undefined reference to `_fftwf_destroy_plan'<br>>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2be1): undefined reference to `_fftwf_destroy_plan'<br>>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2bf7): more undefined references to `_fftwf_destroy_plan' follow<br>>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2c37): undefined reference to `_fftwf_free'<br>>> .libs/gmx_fft_fftw3.o:gmx_fft_fftw3.c:(.text+0x2d17): undefined reference to `_fftwf_free'<br>>> collect2: ld returned 1 exit status<br>>> Makefile:387: recipe for target `libmd.la' failed<br>>> make[3]: *** [libmd.la] Error 1<br>>> make[3]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src/mdlib'<br>>> Makefile:302: recipe for
target `all-recursive' failed<br>>> make[2]: *** [all-recursive] Error 1<br>>> make[2]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'<br>>> Makefile:238: recipe for target `all' failed<br>>> make[1]: *** [all] Error 2<br>>> make[1]: Leaving directory `/cygdrive/d/GROMACSNEW/GROMACS455/gromacs-4.5.5/src'<br>>> Makefile:347: recipe for target `all-recursive' failed<br>>> make: *** [all-recursive] Error 1<br>>> -- gmx-users mailing list <a href="mailto:gmx-users@gromacs.org" ymailto="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>>> <a href="http://lists.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>>> Please search the archive at <a href="http://www.gromacs.org/Support/Mailing_Lists/Search" target="_blank">http://www.gromacs.org/Support/Mailing_Lists/Search</a> before
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