<br><div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div bgcolor="#FFFFFF" text="#000000"><div class="im"><blockquote type="cite">
2) Also I've found that there is more simple way to define
restraines based on the BONDS enty in the topology file. Could you
provide me with the more information about this simpler way ?<br>
</blockquote>
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Simpler, but not a restraint to within a region. The manual section
we are discussing links you to the available documentation elsewhere
in the manual. I don't have the time to help with every
interpretation question you might have.<span class="HOEnZb"><font color="#888888"><br>
<br>
Mark</font></span><div><div class="h5"><br></div></div></div></blockquote><div>Mark,<br><br><br>In more details I want to generate network of disres for all helices H-bonds. So I
want to restraint H-bond distance between i and i+4 atoms of the
backbone.<br>
<br>
What is the simplest way to do such task? I think that the ussage of
genrestr -disre could be useful for such generation of the complex
disres because of the size of my protein. But how I could define the
restrained atoms (i, i+4 atoms ) ? In the make_ndx options I didnt find
the most trivial sollution of the such choise. So the only sollution is
to define each I and I+4 atoms of the backbone manualy, isnt it ? <br>
<br>
James <br></div></div>