<html><body><div style="color:#000; background-color:#fff; font-family:times new roman, new york, times, serif;font-size:14pt"><div><font size="3">Dear All,</font></div><div style="font-family: times new roman, new york, times, serif; font-size: 14pt;"><div style="font-family: times new roman, new york, times, serif; font-size: 12pt;"><div id="yiv1005846339"><div><div style="color: rgb(0, 0, 0); font-family: times new roman, new york, times, serif; font-size: 12pt; background-color: rgb(255, 255, 255);"><div> </div><div>I am using the GROMACS 3.3.3 to practice the lysozyme tutorial of Justin Lemkul <a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/index.html" rel="nofollow" target="_blank"><font>http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/lysozyme/index.html</font></a>.</div><div> </div><div><font>For the final part grompps, for example "<font>grompp -f npt.mdp -c nvt.gro -t
nvt.cpt -p topol.top -o npt.tpr</font>", it shows the nvt.cpt.trr. cannot be read. Then I change "grompp -f npt.mdp -c nvt.gro -t nvt.cpt -p topol.top -o npt.tpr" into "<font>grompp -f npt.mdp -c nvt.gro -t nvt.trr -p topol.top -o npt.tpr</font>", it works.</font></div><div> </div><div><font>I am looking a clarification from you that my change is correct.</font></div><div> </div><div><font>Cheers,</font></div><div> </div><div> </div><div><font>Acoot</font></div><div><br></div></div></div></div><meta content="on" http-equiv="x-dns-prefetch-control"><br><br> </div> </div> </div></body></html>