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On 22/03/2012 2:54 PM, Spring buds wrote:
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cite="mid:CANDSGMErjSOP+n1JsoaeWZmg3Q6HSHX4JAWe8zWN5gnQ+-MpWw@mail.gmail.com"
type="cite">Hi
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<div>A protein sits on the top of another protein (not docking). I
then used pdb2gmx command to generate the
topology. Surprisingly, i got five files, as given below: I
think the two proteins are not connected each other. is it
possible to make it one posre and topol file.</div>
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<br>
Yes, see discussion in pdb2gmx -h. (Checking -h should always been a
first place to look for information)<br>
<br>
Mark<br>
<br>
<blockquote
cite="mid:CANDSGMErjSOP+n1JsoaeWZmg3Q6HSHX4JAWe8zWN5gnQ+-MpWw@mail.gmail.com"
type="cite">
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<div>Many thanks in advance</div>
<div><br>
</div>
<div>posre_Protein_chain_A.itp</div>
<div>posre_Protein_chain_A2.itp</div>
<div>topol.top</div>
<div>topol_Protein_chain_A.itp</div>
<div>topol_Protein_chain_A2.itp</div>
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