Hi Justin,<div><br></div><div>Thanks for reply. I will look into.<br><br><div class="gmail_quote">On Fri, Mar 23, 2012 at 10:30 AM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im"><br>
<br>
Spring buds wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi<br>
<br>
I am trying to average the structure from the last 10ns from 100ns. So I used the command which is below:<br>
<br>
g_rmsf –f 100.xtc –s topol.tpr –b 90001 –e 100000 –ox traj_avg.pdb<br>
<br>
But I got below error: <br>
"Program g_rmsf, VERSION 4.5.4<br>
Source code file: /root/Desktop/gromacs-4.5.4/<u></u>src/gmxlib/trxio.c, line: 713<br>
<br>
Fatal error:<br>
Specified frame doesn't exist or file not seekable"<br>
<br>
</blockquote>
<br></div>
You're specifying a frame that doesn't exist, either 90001 or 100000. Likely 90001 is not an actual time in the trajectory, thus giving rise to the "not seekable" error.<br>
<br>
-Justin<br>
<br>
-- <br>
==============================<u></u>==========<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | <a href="tel:%28540%29%20231-9080" value="+15402319080" target="_blank">(540) 231-9080</a><br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
<br>
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