You can use g_saltbr option , <a href="http://manual.gromacs.org/online/g_saltbr.html">http://manual.gromacs.org/online/g_saltbr.html</a><br><br><div class="gmail_quote">On Thu, Apr 5, 2012 at 5:23 PM, James Starlight <span dir="ltr"><<a href="mailto:jmsstarlight@gmail.com">jmsstarlight@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Dear Gromacs Users!<br><br><br>I'd like to monitor origin and destabilisation of salt-bridges during simulation time. In particular I want to define some charged residues within selection groups to monitor both of intra-protein as well as protein-protein interactions. In past I've used only <a dir="ltr" href="http://manual.gromacs.org/online/g_hbond.html" target="_blank">g_hbond</a> utillity to monitor Hbonds within selection. Is there any specified program for such task but with salt-bridges only ?<br>
<br><br>Thanks for help,<br><br>James<br>
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