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On 11/04/2012 3:48 PM, priya thiyagarajan wrote:
<blockquote
cite="mid:CAEuVTxBgwWEsdO5+14s5EC9_J_bFe4WH9PjVYm=w+gyw8fnocA@mail.gmail.com"
type="cite">hello sir,<br>
<br>
i am studying about micelle formation of surfactants. i performed
my run for 10ns.. when i visualize my final md pdb file i got
around 2 to 3 micelles. <br>
<br>
my doubt is while performing analysis , g_gyrate giving a value of
around 3nm..<br>
<br>
this value corresponds to which micelle..<br>
</blockquote>
<br>
None of them. It corresponds to the group you told g_gyrate to
analyse. See g_gyrate -h. Since you haven't told us which group you
told g_gyrate to use, you've forced me to guess that you told it to
work on all your surfactant molecules. If you'd given a full
description of what you'd done, then you'd be more likely to have
people wanting and able to help you, and thus be more likely to get
useful help. Anyway, g_gyrate can't guess that you want it to look
at some magic subsets of the whole system. You have to define the
subsets, e.g. with g_select, and only then can g_gyrate compute
properties on them.<br>
<br>
Mark<br>
<br>
<blockquote
cite="mid:CAEuVTxBgwWEsdO5+14s5EC9_J_bFe4WH9PjVYm=w+gyw8fnocA@mail.gmail.com"
type="cite"><br>
how its calculating this value.. <br>
<br>
please help me with your answer..<br>
<br>
i am so confused with my analysis..<br>
<br>
thanking you,<br>
<br>
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<br>
</blockquote>
<br>
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