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On 17/04/2012 11:12 PM, anupam sinha wrote:
<blockquote
cite="mid:CAPPk2AjceNSihjxSvRSWF_1_M4gtS=s9R6tJfK_zhGh_kqG5rw@mail.gmail.com"
type="cite">
<div class="gmail_quote"><br>
Dear All,
<div> I have tried installing gromacs (after
installing fftw3 library)on a GPU system using the following :</div>
<div><br>
</div>
<div>./configure --with-fft=fftw3 --enable-float</div>
<div><br>
</div>
<div>After I type "make" I get the following error after
sometime.</div>
<div>.</div>
<div>.</div>
<div>.</div>
<div><br>
</div>
<div>
<div>/usr/bin/ld:
/home/anupam/fftw-3.3.1/.libs/libfftw3f.a(apiplan.o):
relocation R_X86_64_32 against `a local symbol' can not be
used when making a shared object; recompile with -fPIC</div>
<div>/home/anupam/fftw-3.3.1/.libs/libfftw3f.a: could not read
symbols: Bad value</div>
<div>collect2: ld returned 1 exit status</div>
<div>make[3]: *** [<a moz-do-not-send="true"
href="http://libmd.la" target="_blank">libmd.la</a>] Error
1</div>
<div>make[3]: Leaving directory
`/home/anupam/gromacs-4.5.5/src/mdlib'</div>
<div>make[2]: *** [all-recursive] Error 1</div>
<div>make[2]: Leaving directory
`/home/anupam/gromacs-4.5.5/src'</div>
<div>make[1]: *** [all] Error 2</div>
<div>make[1]: Leaving directory
`/home/anupam/gromacs-4.5.5/src'</div>
<div>make: *** [all-recursive] Error 1</div>
</div>
<br>
</div>
</blockquote>
<br>
See <a
href="http://www.gromacs.org/Documentation/Installation_Instructions#Details_for_building_the_FFTW_prerequisite">http://www.gromacs.org/Documentation/Installation_Instructions#Details_for_building_the_FFTW_prerequisite</a><br>
<br>
Mark<br>
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