<br>Hi Javier,<br><br>I did tried using the swisspdb for adding missing atoms still am receiving the same error.<br><br><br><div class="gmail_quote">On Wed, Apr 18, 2012 at 3:44 PM, Javier Cerezo <span dir="ltr"><<a href="mailto:jcb1@um.es">jcb1@um.es</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Your PDB structure have probably some missing atoms. Check if this
is the case for residue nr. 7. <br>
<br>
To solve it you can use an external tool to process your PDB file
adding the missing atoms. I've used SwissPDB and worked fine.<br>
<br>
Javier<br>
<br>
El 18/04/12 11:24, aiswarya pawar escribió:
<div><div class="h5"><blockquote type="cite">Hi Users,<br>
<br>
I did the following step=<br>
pdb2gmx -ignh -f 1ahw.pdb -o sample.pdb -p sample.top<br clear="all">
<br>
<br>
and received an error= Atom ND1 not found in residue <a href="http://seq.nr" target="_blank">seq.nr</a>. 7 while
adding atom.<br>
<br>
I dont understand how do i rectify this.<br>
<br>
<br>
-- <br>
Aiswarya <br>
<br>
<fieldset></fieldset>
<br>
</blockquote>
<br>
</div></div><span class="HOEnZb"><font color="#888888"><div>-- <br>
Javier CEREZO BASTIDA<br>
PhD Student<br>
Physical Chemistry<br>
Universidad de Murcia<br>
Murcia (Spain)<br>
Tel: (+34)868887434
</div>
</font></span></div>
<br>--<br>
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