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Your PDB structure have probably some missing atoms. Check if this
is the case for residue nr. 7. <br>
<br>
To solve it you can use an external tool to process your PDB file
adding the missing atoms. I've used SwissPDB and worked fine.<br>
<br>
Javier<br>
<br>
El 18/04/12 11:24, aiswarya pawar escribió:
<blockquote
cite="mid:CAEa6cRAhGQSE0yg_A4oV-3PO3BU=LvajZV9GTgeEthqz4buvrQ@mail.gmail.com"
type="cite">Hi Users,<br>
<br>
I did the following step=<br>
pdb2gmx -ignh -f 1ahw.pdb -o sample.pdb -p sample.top<br
clear="all">
<br>
<br>
and received an error= Atom ND1 not found in residue <a
moz-do-not-send="true" href="http://seq.nr">seq.nr</a>. 7 while
adding atom.<br>
<br>
I dont understand how do i rectify this.<br>
<br>
<br>
-- <br>
Aiswarya <br>
<br>
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<br>
</blockquote>
<br>
<div class="moz-signature">-- <br>
Javier CEREZO BASTIDA<br>
PhD Student<br>
Physical Chemistry<br>
Universidad de Murcia<br>
Murcia (Spain)<br>
Tel: (+34)868887434
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