HI vineetha,<br><br><br><div class="gmail_quote">On Sat, Apr 21, 2012 at 9:32 PM, vineetha mandlik <span dir="ltr"><<a href="mailto:vinee2here@gmail.com">vinee2here@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br><br><div><br><br><br>Respected Sir/Madam<br><br>I am new to gromacs and on giving the grompp command after genion command I am getting the following error:<br>
<br><br><br>Even after running the genion command and adding 4 Na+ ions before the grompp command i still get<br>
<br>Note: the system has non zero charge: -4.99998e+0.0 and then this error..<br><br>Number of coordinates in coordinate file (x_b4em.gro,24736) does not match topology (x.top,247535). <br><br></div></blockquote><div> These shows that your co-ordinates not matching <br>
with topology file....<br>So use the -p <file name>.top flag<br>after solvent and ion adiitions, these will prevent such errors<br></div><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div class="gmail_quote">so can you help me in resolving this issue..<br>
<br><br>Any help in this regard will be highly appreciated.<br><br>
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