<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><value><div><value>Have a look at this one:</value></div><div><value><br></value></div>The effect of box shape on the dynamic properties of proteins simulated under periodic boundary conditions</value>
<span class="FR_label">Author(s):</span> <a hasautosubmit="true" title="Find more records by this author" href="http://apps.webofknowledge.com/OneClickSearch.do?product=UA&search_mode=OneClickSearch&colName=WOS&SID=V2obOe9iLldbafea716&field=AU&value=Wassenaar,%20TA" alt="Find more records by this author">
<name dais_id="">
<span class="hitHilite">Wassenaar, TA</span>
</name>
</a> (<span class="hitHilite">Wassenaar, TA</span>)<sup></sup>; <a hasautosubmit="true" title="Find more records by this author" href="http://apps.webofknowledge.com/OneClickSearch.do?product=UA&search_mode=OneClickSearch&colName=WOS&SID=V2obOe9iLldbafea716&field=AU&value=Mark,%20AE&ut=16105890&pos=%7B2%7D" alt="Find more records by this author">Mark, AE</a> (Mark, AE)<sup></sup>
<b>Source: </b>
<value>JOURNAL OF COMPUTATIONAL CHEMISTRY</value> <span class="FR_label">Volume:</span>
<value>27</value> <span class="FR_label">Issue:</span>
<value>3</value> <span class="FR_label">Pages:</span>
<value>316-325</value> <span class="FR_label">DOI:</span>
<value>10.1002/jcc.20341</value> <span class="FR_label">Published:</span>
<value>FEB 2006</value><div><br><div><div>21 apr 2012 kl. 16.00 skrev Shima Arasteh:</div><br class="Apple-interchange-newline"><blockquote type="cite"><div><div style="color:#000; background-color:#fff; font-family:arial, helvetica, sans-serif;font-size:12pt"><div>Dear Gomacs friends,</div><div><br></div><div>I'd like to know if it makes different in the last outcomes of a simulation when I change the box? For example I use <font face="Arial"><font size="3">dodecahedron instead of cubic one. I just know that I need to add less numbers of water molecules.</font></font></div><div><br></div><div><font face="Arial"><font size="3">Thanks in advance,</font></font></div><div><font face="Arial"><font size="3">Shima<br></font></font></div></div></div>-- <br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br><a href="http://lists.gromacs.org/mailman/listinfo/gmx-users">http://lists.gromacs.org/mailman/listinfo/gmx-users</a><br>Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting!<br>Please don't post (un)subscribe requests to the list. Use the <br>www interface or send it to gmx-users-request@gromacs.org.<br>Can't post? Read http://www.gromacs.org/Support/Mailing_Lists</blockquote></div><br><div>
<div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>-----------------------------------------------</div><div>Erik Marklund, PhD</div><div>Dept. of Cell and Molecular Biology, Uppsala University.</div><div>Husargatan 3, Box 596, 75124 Uppsala, Sweden</div><div>phone: +46 18 471 6688 fax: +46 18 511 755</div><div><a href="mailto:erikm@xray.bmc.uu.se">erikm@xray.bmc.uu.se</a></div><div><a href="http://www2.icm.uu.se/molbio/elflab/index.html">http://www2.icm.uu.se/molbio/elflab/index.html</a></div></div></span></div>
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