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Hi<br>Thanks for your earlier reply:<br>./configure worked after I set CPPFLAGS and LDFLAGS but I am still not able to install gromacs.<br><br>I configured using the following command:<br> ./configure --disable-threads --enable-all-static --without-xml<br><br>It worked without any error messages.<br><br>I entered make and got the following error at the very end:<br><br>make<br>/usr/lib/gcc/i686-pc-cygwin/4.3.4/cc1.exe: error while loading shared libraries:<br> ?: cannot open shared object file: No such file or directory<br>make[5]: *** [nb_kernel400_ia32_sse.lo] Error 1<br>make[5]: Leaving directory `/home/Administrator/gromacs-4.5.5/src/gmxlib/nonbond<br>ed/nb_kernel_ia32_sse'<br>make[4]: *** [all-recursive] Error 1<br>make[4]: Leaving directory `/home/Administrator/gromacs-4.5.5/src/gmxlib/nonbond<br>ed'<br>make[3]: *** [all-recursive] Error 1<br>make[3]: Leaving directory `/home/Administrator/gromacs-4.5.5/src/gmxlib'<br>make[2]: *** [all-recursive] Error 1<br>make[2]: Leaving directory `/home/Administrator/gromacs-4.5.5/src'<br>make[1]: *** [all] Error 2<br>make[1]: Leaving directory `/home/Administrator/gromacs-4.5.5/src'<br>make: *** [all-recursive] Error 1<br><br>How can I fix this?<br>Thanks<br>Vijaya<br><br><br><div><div id="SkyDrivePlaceholder"></div><hr id="stopSpelling">Date: Sun, 22 Apr 2012 13:28:42 +1000<br>From: Mark.Abraham@anu.edu.au<br>To: gmx-users@gromacs.org<br>Subject: Re: [gmx-users] gromacs 4.5.5 on Cygwin<br><br>
On 22/04/2012 9:30 AM, vijaya subramanian wrote:
<blockquote cite="mid:SNT124-W34B7C2A49711031EA43ACBC0230@phx.gbl">
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Hi <br>
I am trying to install gromacs 4.5.5 on cygwin following the
instructions in the wiki.<br>
I first installed fftw3 using the following commands:<br>
./configure --enable-float<br>
make<br>
make install<br>
<br>
I then tried installing gromacs using:<br>
./configure --disable-threads <br>
<br>
as well as<br>
./configure --disable-threads --enable-all-static<br>
<br>
but I get the following error message and configure exits:<br>
<br>
checking for fftw3.h... yes<br>
checking for main in -lfftw3f... no<br>
configure: error: Cannot find fftw3f library<br>
<br>
I checked /usr/local/lib, it has:<br>
libfftw3f.a libfftw3f.la pkgconfig<br>
<br>
Can anyone help with this issue.<br>
</div>
</blockquote>
<br>
configure doesn't look in /usr/local/lib by default. See
<a class="ecxmoz-txt-link-freetext" href="http://www.gromacs.org/Documentation/Installation_Instructions#Using_autoconf" target="_blank">http://www.gromacs.org/Documentation/Installation_Instructions#Using_autoconf</a><br>
<br>
Mark<br>
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