<html>
<head>
<meta http-equiv="content-type" content="text/html; charset=ISO-8859-1">
</head>
<body bgcolor="#FFFFFF" text="#000000">
Please do not make unsolicited general GROMACS inquiries to private
email addresses. The mailing lists exist for these kinds of
purposes.<br>
<br>
On point, you cannot be helped unless you provide the command lines
that you used and describe the objectives you were trying to
achieve. Whatever changes you make to one of the coordinate and .top
file must be matched in the other.<br>
<br>
Mark<br>
<br>
-------- Original Message --------
<table class="moz-email-headers-table" border="0" cellpadding="0"
cellspacing="0">
<tbody>
<tr>
<th align="RIGHT" nowrap="nowrap" valign="BASELINE">Subject: </th>
<td>Error: coordinate file does not match with the topology
file</td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap" valign="BASELINE">Date: </th>
<td>Wed, 25 Apr 2012 02:05:45 +0800 (SGT)</td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap" valign="BASELINE">From: </th>
<td>sonali shinde <a class="moz-txt-link-rfc2396E" href="mailto:shindesonali14@yahoo.co.in"><shindesonali14@yahoo.co.in></a></td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap" valign="BASELINE">Reply-To:
</th>
<td>sonali shinde <a class="moz-txt-link-rfc2396E" href="mailto:shindesonali14@yahoo.co.in"><shindesonali14@yahoo.co.in></a></td>
</tr>
<tr>
<th align="RIGHT" nowrap="nowrap" valign="BASELINE">To: </th>
<td><a class="moz-txt-link-abbreviated" href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a> <a class="moz-txt-link-rfc2396E" href="mailto:mark.abraham@anu.edu.au"><mark.abraham@anu.edu.au></a></td>
</tr>
</tbody>
</table>
<br>
<br>
<div style="color:#000; background-color:#fff; font-family:times new
roman, new york, times, serif;font-size:12pt">
<div><span></span></div>
<div><br>
</div>
<div style="font-family: times new roman, new york, times, serif;
font-size: 12pt;">
<div style="font-family: times new roman, new york, times,
serif; font-size: 12pt;">
<div dir="ltr"> <font face="Arial" size="2"> ----- Forwarded
Message -----<br>
<b><span style="font-weight:bold;">From:</span></b> sonali
shinde <a class="moz-txt-link-rfc2396E" href="mailto:shindesonali14@yahoo.co.in"><shindesonali14@yahoo.co.in></a><br>
<b><span style="font-weight: bold;">To:</span></b> vini k
<a class="moz-txt-link-rfc2396E" href="mailto:vineetha_mandlik@yahoo.co.in"><vineetha_mandlik@yahoo.co.in></a> <br>
<b><span style="font-weight: bold;">Sent:</span></b>
Monday, 23 April 2012 6:48 PM<br>
<b><span style="font-weight: bold;">Subject:</span></b>
Error: coordinate file does not match with the topology
file<br>
</font> </div>
<br>
<div id="yiv1792506585">
<div>
<div
style="color:#000;background-color:#fff;font-family:times
new roman, new york, times, serif;font-size:12pt;">
<div id="yiv1792506585">
<div>
<div
style="color:#000;background-color:#fff;font-family:times
new roman, new york, times, serif;font-size:12pt;">
<div
id="yiv1792506585yui_3_2_0_16_133517504700340">Dear
Sir,<span></span></div>
<div
id="yiv1792506585yui_3_2_0_16_133517504700348">
I am a user of gromacs 4.0 for molecular dynamic
study of a protein molecule. I have generated
trajectory file before using the same commands
that I use now. Recently I am suffering some
problem using Gromacs , my coordinate file does
not matches with the topology file.I have
attached the pdb file protein, .gro and .top
file . I have encountered same error a number of
times with three different proteins.Please
suggest the answer for the same.</div>
<div
id="yiv1792506585yui_3_2_0_16_1335175047003215">
Thanking you.</div>
</div>
</div>
</div>
</div>
</div>
</div>
<br>
<br>
</div>
</div>
</div>
</body>
</html>