<div class="gmail_extra">Hello Bala,</div><div class="gmail_extra"><br></div><div class="gmail_extra">Yes, exactly as Justin said it represents just a workflow where a GPCR protein (here B2AR) has been taken as an example. I mentioned it as a GPCR tutorial because many often inquire about GPCR MD simulations only in the forum. But it can be adapted for other membrane proteins as well. And secondly again as Justin mentioned, the choice of lipid depends upon the system you wish to replicate.</div>
<div class="gmail_extra"><br></div><div class="gmail_extra">Regards,</div><div class="gmail_extra"><br></div><div class="gmail_extra">Anirban<br><br><div class="gmail_quote">On Thu, Apr 26, 2012 at 11:10 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="im"><br>
<br>
On 4/26/12 9:35 AM, Bala S wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Dear Anirban,<br>
<br>
Thanks for the tutorial you have created for the newbies like me to follow.<br>
<br>
I wonder the tutorial is only for the GPCRs not applicable for other<br>
membrane proteins?<br>
<br>
</blockquote>
<br></div>
Tutorials present possible workflows. Anirban's tutorial does not significantly differ from my own (linked from his) which I happen to know has been applied to many different systems. There is nothing GPCR-specific in this new tutorial, just like there is nothing KALP-specific about mine.<div class="im">
<br>
<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
I also have another question about slecting a lipidbilayer, what is the<br>
criteria is selecting it, for instance popc, dopc or dppc?<br>
<br>
</blockquote>
<br></div>
The choice of lipid depends on what you need to model.<br>
<br>
-Justin<br>
<br>
-- <br>
==============================<u></u>==========<br>
<br>
Justin A. Lemkul<br>
Ph.D. Candidate<br>
ICTAS Doctoral Scholar<br>
MILES-IGERT Trainee<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
<a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.<u></u>vt.edu/Pages/Personal/justin</a><br>
<br>
==============================<u></u>==========<div class="HOEnZb"><div class="h5"><br>
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