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<div>> Does the cylinder geometry work if you use "pull_start = no" and pull_init1 <br>> equal to your starting (restraint) distance? I'm just trying to go through all <br>> of the iterations of what might be failing. In theory, what you're doing is <br>> fine but I'd be interested to know if there was something failing in the input <br>> parsing such that pull_start is not being properly applied. The screen output <br>> of grompp will also tell you what it believes the restraint distance is. If it <br>> prints 0, then there's a problem with input processing.<br>> <br>> If the problem is reproducible in the latest Gromacs version (4.5.5), please <br>> file a bug report on redmine.gromacs.org so that it can be investigated. Please <br>> provide .tpr file of the system so that the developers can run what you are <br>> trying to do and see.<br>> <br>> -Justin<br></div><div><br></div><div>It works if I set pull_start to the initial distance given by g_dist things work just fine.</div><div><br></div><div>So this will be the way for now at least.</div><div><br></div><div>Guess that there could be an error in the inout parsing then. </div><div><br></div><div>Thanks a lot for your help, really appreciate it.</div> </div></body>
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