<br><br><div class="gmail_quote">On Mon, May 7, 2012 at 10:17 AM, Bala S <span dir="ltr"><<a href="mailto:think_beyond@aol.com" target="_blank">think_beyond@aol.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Justin and Anirban,<br>
<br>
I have another query on membrane simulation following your tutorials.<br>
<br>
How do I insert only a part of protein into the lipid bilayer and carryout<br>
the simulation?<br></blockquote><div><br></div><div>editconf with -box option helps you to orient your protein with respect to the bilayer. And visually in VMD you have the option of move a "molecule" under "mouse" option in which you can move your protein wrt the bilayer (when the bilayer and the protein .gro/.pdb files are loaded separately in VMD).</div>
<div><br></div><div>-Anirban</div><div> </div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>
Thanks<br>
Bala S<br>
<br>
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