<br /><p>Dear all,</p><p>my coarse grained simulations contain a cubic box
with 16 peptides. After 85ns peptides aggregate but because of PBC I
have problem in analyzing some data like radius of gyration and
clustering. I searched mailing list to solve this problem by trjconv. I
examined its different options but without any results. casually
genconf came in my mind. I want to use this command for a trajectory
with option -trj</p><p>genconf -f .tpr -trj .xtc/.gro -o .gro -nbox 2 1
1</p><p> but when I use it I face with "Segmentation
fault". I searched mailing list and found just one
question"http://lists.gromacs.org/pipermail/gmx-users/2004-July/011196.html"
whithout answer.<br />
</p><p>Please guide me wheather this command can help me to generate an
aggregated system for analyzing? If Yes, How? If No help me
please?</p>Thank you in advance<br />
Faezeh Kargar<br /><br /><br />--
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