<br><br><div class="gmail_quote">On Tue, May 15, 2012 at 11:48 AM, rama david <span dir="ltr"><<a href="mailto:ramadavidgroup@gmail.com" target="_blank">ramadavidgroup@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<br>Thank you ANIRBAN for your reply ..<br><div class="gmail_quote"><span dir="ltr"></span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="gmail_quote">
<div class="im">
<div><div><br></div></div><div>I think its better to remove the periodicity when you are going to start a fresh simulation with this protein.</div></div><div>
<div> Could you told me how to remove the periodicity ???<br></div></div></div></blockquote></div></blockquote><div><br></div><div>You can use trjconv with "-pbc mol -ur compact" options. But first look into trjconv -h</div>
<div><span style="text-align:left"><br></span></div><div style="text-align:-webkit-auto"><span style="text-align:left">-Anirban </span></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div class="gmail_quote"><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div class="gmail_quote"><div><div></div></div></div></blockquote><div> </div><blockquote class="gmail_quote" style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<div class="gmail_quote"><div><div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><br>Thank you in advance ...</blockquote></div></div></blockquote><div>
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