<html><head></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><br><div><div>17 maj 2012 kl. 09.01 skrev Seera Suryanarayana:</div><br class="Apple-interchange-newline"><blockquote type="cite"><br><br><div class="gmail_quote">---------- Forwarded message ----------<br>From: <b class="gmail_sendername">Seera Suryanarayana</b> <span dir="ltr"><<a href="mailto:palusoori@gmail.com" target="_blank">palusoori@gmail.com</a>></span><br>
Date: Thu, May 17, 2012 at 12:07 PM<br>Subject: How to overcome syntax errors<br>To: <a href="mailto:jalemkul@vt.edu" target="_blank">jalemkul@vt.edu</a><br><br><br>Dear Justin,<br> While i am running gromacs software i am getting the following syntax errors.<br>
<br><br>Fatal error:<br>Syntax error - File 1AX8.top, line 7934<br>Last line read:<br>'## #include"ions.itp"'<br>
<br><br>I am unable to create " _b4em.gro files".Please let me know at what position i have to add ## #include"ions.itp" and Add NA ions or CL ions<br></div></blockquote><div><br></div>So if you want to include ions.itp, then you should first of all have a space between the "include" and the filename. Secondly, you should not have three hashes, just one, without trailing spaces.</div><div><br></div><div>Erik</div><div><br><blockquote type="cite"><div class="gmail_quote"><br>Is there any explanation why is this happening? I would aooreciate any help.I am new in using MD and gromacs in particular. <br>
<span><font color="#888888"><br>Suryanarayana Seera,<br>PhD student,<br>
Hyderabad,<br>India.<br>
</font></span></div><br>
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<span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: -webkit-auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; font-size: medium; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>-----------------------------------------------</div><div>Erik Marklund, PhD</div><div>Dept. of Cell and Molecular Biology, Uppsala University.</div><div>Husargatan 3, Box 596, 75124 Uppsala, Sweden</div><div>phone: +46 18 471 6688 fax: +46 18 511 755</div><div><a href="mailto:erikm@xray.bmc.uu.se">erikm@xray.bmc.uu.se</a></div><div><a href="http://www2.icm.uu.se/molbio/elflab/index.html">http://www2.icm.uu.se/molbio/elflab/index.html</a></div></div></span></div></span></span>
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